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Preliminary implementation, for vdj_assign

> pear.py > don't produce output file on failure
> don't reschedule run if pre-process has failed

We are not in maintenance anymore. By default, autodelete

Three nucleotides after one insertion and one mutation. This may be dubious.

At the moment the program can only be used to check one assignation.
It may be improved in the future.

display task scheduler result

before > true/false
after > WAIT/QUEUD/RUN/DONE/FAILED

adapt form o the selected pre_process

add separator

2 sequences with 3 or 4 exact nucleotides after the mutation

Whether you consider the mutation as being part of the V or not, you
have two possibilities.

Use the alternate syntax to take them into account

Deletion in 5'J is 5 instead of 6.

Checked against germline

48 VDJ sequences and 15 VJ/DJ/DDJ sequences, curated by Gary Wright

- 3 sequences with 2 conserved nucleotides after a mutation -> alternative solution
- 2 other sequences -> actual bug

Specific PEAR options should be configured through pre-process configs.

Preprocess filename was an id followed by .fastq. Instead we try to take the
best among the two filenames (or only the first filename, if there is no
second filename). This will be more meaningful to the user and the file
is not necessarily in .fastq format.

The end user should have access to the pre-process log.