- 23 Apr, 2016 2 commits
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Mathieu Giraud authored
Preliminary implementation, for vdj_assign
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Mathieu Giraud authored
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- 22 Apr, 2016 15 commits
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Mathieu Giraud authored
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marc authored
> pear.py > don't produce output file on failure > don't reschedule run if pre-process has failed
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Mikaël Salson authored
We are not in maintenance anymore. By default, autodelete
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Three nucleotides after one insertion and one mutation. This may be dubious.
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Mathieu Giraud authored
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Mikaël Salson authored
At the moment the program can only be used to check one assignation. It may be improved in the future.
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Mikaël Salson authored
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marc authored
display task scheduler result
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marc authored
before > true/false after > WAIT/QUEUD/RUN/DONE/FAILED
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marc authored
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marc authored
adapt form o the selected pre_process
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marc authored
add separator
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- 21 Apr, 2016 23 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
2 sequences with 3 or 4 exact nucleotides after the mutation
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mikaël Salson authored
Whether you consider the mutation as being part of the V or not, you have two possibilities.
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Mikaël Salson authored
Use the alternate syntax to take them into account
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Mikaël Salson authored
Deletion in 5'J is 5 instead of 6.
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Mikaël Salson authored
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Mikaël Salson authored
Checked against germline
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Mathieu Giraud authored
48 VDJ sequences and 15 VJ/DJ/DDJ sequences, curated by Gary Wright
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Mathieu Giraud authored
- 3 sequences with 2 conserved nucleotides after a mutation -> alternative solution - 2 other sequences -> actual bug
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Mathieu Giraud authored
Specific PEAR options should be configured through pre-process configs.
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marc authored
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Mathieu Giraud authored
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Mikaël Salson authored
Preprocess filename was an id followed by .fastq. Instead we try to take the best among the two filenames (or only the first filename, if there is no second filename). This will be more meaningful to the user and the file is not necessarily in .fastq format.
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Mikaël Salson authored
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Mikaël Salson authored
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Mathieu Giraud authored
The end user should have access to the pre-process log.
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Mathieu Giraud authored
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