- 28 Feb, 2016 10 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
All full codons aligned with the J germline gene are translated according to this frame.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Finally Vidjil learns the genetic code.
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Mathieu Giraud authored
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Mathieu Giraud authored
This was realized after prototyping and tests by @flothoni. As in IMGT/JunctionAnalysis, the detection relies on the positions of Cys104 and Phe118/Trp118. The detection is here in O(n), taking advantage of the already aligned V and J segments. The current implementation will not give a precise positions when there are insertions or deletions between Cys104 and the end of the V segment (or between the start of J segment and Phe118/Trp118). This could be improved by backtracking the DP matrix.
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Mathieu Giraud authored
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- 27 Feb, 2016 13 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
There are currently no gapped J sequences distributed by IMGT. We create these sequences aligned on the Phe118/Trp118.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
The Sequence structure has now an additional field.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
The gapped sequences should be all aligned. One may want to remember a specific position.
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Mathieu Giraud authored
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Mathieu Giraud authored
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- 26 Feb, 2016 2 commits
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HERBERT Ryan authored
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HERBERT Ryan authored
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- 25 Feb, 2016 5 commits
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HERBERT Ryan authored
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HERBERT Ryan authored
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HERBERT Ryan authored
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HERBERT Ryan authored
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HERBERT Ryan authored
Put the results_file data_file stream back in because it is needed
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- 23 Feb, 2016 4 commits
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HERBERT Ryan authored
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HERBERT Ryan authored
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HERBERT Ryan authored
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HERBERT Ryan authored
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- 22 Feb, 2016 6 commits
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Mathieu Giraud authored
(n * n) may be too large for an int when (n) is large.
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Mathieu Giraud authored
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HERBERT Ryan authored
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HERBERT Ryan authored
controllers/patient.py fixed a bug where a deleted patient could be deleted a second time, leading to an error
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Mathieu Giraud authored
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Mathieu Giraud authored
'phantom.args' is removed in latest versions of phantomjs
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