- 22 Aug, 2019 1 commit
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Thonier Florian authored
Link to #3944
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- 03 Jun, 2019 8 commits
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Mikaël Salson authored
V-QUEST API change Closes #3913 See merge request !472
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Mikaël Salson authored
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Mikaël Salson authored
Otherwise the ntseq is not given in the CSV file See #3913
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Mikaël Salson authored
IMGT/V-QUEST now requires to have the common name of the species, not the latin one. Thus we need a function to do the conversion. See #3913
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Mikaël Salson authored
Those parameters are not useful anymore. They were used before #3913.
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Mikaël Salson authored
Some parameters were slightly different from what was expected. See #3913
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Mikaël Salson authored
See #3913
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Mikaël Salson authored
See #3913
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- 24 May, 2019 2 commits
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Mathieu Giraud authored
Check permissions before retrieving results Closes vdj#880 See merge request !476
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Mikaël Salson authored
Fix vdj#880
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- 23 May, 2019 6 commits
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Mikaël Salson authored
Merge branch 'feature-c/3488-decalage-de-la-sequence-du-cdr3-et-de-la-jonction-dans-la-fenetre-info' into 'dev' Resolve "Décalage de la séquence du CDR3 et de la jonction dans la fenêtre info" Closes #3488 See merge request !471
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Mathieu Giraud authored
Resolve "Avoir des germline de poulet" Closes #3910 See merge request !470
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Mathieu Giraud authored
link to #3910
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link to #3910
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Link to #3910
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link to #3910
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- 22 May, 2019 3 commits
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Mathieu Giraud authored
doc/vidjil-algo.md: productivity discordance + server See merge request !475
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Mathieu Giraud authored
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Mathieu Giraud authored
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- 21 May, 2019 1 commit
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Mathieu Giraud authored
See #2526.
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- 17 May, 2019 3 commits
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Thonier Florian authored
link to #3488
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Mikaël Salson authored
Release 2019.05 See merge request !473
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Mathieu Giraud authored
see #3914
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- 16 May, 2019 7 commits
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Mathieu Giraud authored
see #3914
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Mathieu Giraud authored
core/representative.h, vidjil.cpp: RandomScore by default See merge request !464
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Mikaël Salson authored
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Mikaël Salson authored
It will depend on the order in which reads are coming when computing the representative but this order is random. What is important is that we find a representative of the correct length with the correct sequence whatever the read name and read positions are.
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It is hard to predict the result is not totally deterministic (as is the case with the RandomScorer, which is now by default, whose results depend on the pseudo-random generator that may differ depending on the OSes) See #3866
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Mathieu Giraud authored
see #3866
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Mathieu Giraud authored
see #3866
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- 15 May, 2019 4 commits
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Thonier Florian authored
link to #3488
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Thonier Florian authored
link to #3488
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Thonier Florian authored
link to #3488
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Thonier Florian authored
link to #3488
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- 26 Apr, 2019 5 commits
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Mikaël Salson authored
Feature a/3206 rename and merge should Closes #3762 See merge request !467
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Mathieu Giraud authored
Optimizations, including e-value computations, max12 See merge request !468
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Computing them for each read is time consuming. But many of the are common (there are few different index loads and the read length is small)
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This prevents from recomputing it each time
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