1. 29 Nov, 2017 1 commit
  2. 31 Oct, 2017 1 commit
  3. 15 Sep, 2017 1 commit
  4. 14 Sep, 2017 1 commit
  5. 13 Sep, 2017 1 commit
  6. 04 Sep, 2017 2 commits
  7. 28 Aug, 2017 11 commits
  8. 25 Aug, 2017 1 commit
  9. 07 Jul, 2017 2 commits
    • Mikaël Salson's avatar
      algo/: Count number of sequences independently of input format · ba7c8b9e
      Mikaël Salson authored
      Use OnlineBioReader rather than a Fasta reader
      ba7c8b9e
    • Mikaël Salson's avatar
      algo/: Refactor Fasta to BioReader · 3d8ff242
      Mikaël Salson authored
      We now have an abstract class to deal with biological sequence files. This
      will allow to more easily manage different file types.
      
      This commit only reorganizes the code so that we will be able to add a BAM
      reader easily. Functionnally the code should be equivalent to its previous
      version.
      
      Some functions that were not used have been removed.
      
      The operator>> has been removed as it was only used in unit testing. This
      operator is not convenient as having the filename may be useful to reopen the
      file or to know its extension, to guess the filetype.
      
      See #2016
      3d8ff242
  10. 14 Mar, 2017 3 commits
  11. 13 Mar, 2017 4 commits
  12. 07 Mar, 2017 2 commits
  13. 03 Mar, 2017 2 commits
  14. 19 Feb, 2017 1 commit
  15. 14 Feb, 2017 1 commit
  16. 02 Feb, 2017 3 commits
  17. 01 Feb, 2017 2 commits
  18. 30 Jan, 2017 1 commit
    • Mathieu Giraud's avatar
      germline/: rename to homo-sapiens.g · 6226ac4a
      Mathieu Giraud authored
      The .g files will be now referred as "germline/homo-sapiens.g", instead of
      the longer and redundant "germline/homo-sapiens.germline".
      This will improve readability at several places, and is
      far more meaningful than the previous "germline/germlines.data".
      6226ac4a