Commits · 4bcfd78732d9735b59af4b7ced0aa736a2c925f6 · vidjil / vidjil

04 Jun, 2018 1 commit
- tests: rename a test · 4bcfd787
  Mathieu Giraud authored Jun 04, 2018
  
  4bcfd787
31 May, 2018 6 commits
- tests: add test, compare two samples · 42d57f08
  Mathieu Giraud authored May 31, 2018
  
  42d57f08
- tests: update · b462491b
  Mathieu Giraud authored May 31, 2018
  
  b462491b
- js/numerical_axis.js: log scale, put undefined value at the min · a3bd9fc8
  Mathieu Giraud authored May 31, 2018
  
  a3bd9fc8
- js/scatterPlot.js: updateCloneSize(), fix small sizes · f8075d81
  Mathieu Giraud authored May 31, 2018
  
  f8075d81
- js/scatterPlot.js: fix condition to set sp.otherVisibility · 8ed135bc
  Mathieu Giraud authored May 31, 2018
```
Follows 52998016.
```
  8ed135bc
- merge -- Ikaros/ERG recombinations · f237a384
  Mathieu Giraud authored May 31, 2018
```
New great experimental feature by @flothoni
Closes #2139.
See also #3102, #3231, #3232, #3229.
```
  f237a384
30 May, 2018 1 commit
- Merge branch 'hotfix-s/3065-fix_unit_tests' into 'dev' · 60110828
  Mikaël Salson authored May 30, 2018
```
Hotfix s/3065 fix unit tests

Closes #3065

See merge request !197
```
  60110828
25 May, 2018 25 commits
- should-vdj-tests/ikaros.should-vdj.fa: shouldvdj tests don't work with custom germlines · 018f0fed
  Mikaël Salson authored May 25, 2018
```
The tests have been moved in a should-get test
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  018f0fed
- tests: update, detail · aca1f970
  Mathieu Giraud authored May 25, 2018
  
  aca1f970
- tests: update · 4e4b31f4
  Mathieu Giraud authored May 25, 2018
  
  4e4b31f4
- germline/homo-sapiens/IKAROS-as-{V,J}.fa: reanme genes · 8b54167e
  Mathieu Giraud authored May 25, 2018
```
See #3102.
```
  8b54167e
- should-get-tests/ikaros-debre.should-get: New sequences have been added. We now have 22 of them · 3af5232c
  Mikaël Salson authored May 25, 2018
  
  3af5232c
- should-get-tests/ikaros-debre.should-get: Move comments in the description line · 42a46473
  Mikaël Salson authored May 25, 2018
  
  42a46473
- should-get-tests/ikaros-debre.should-get: No need for output file · a8bd29d3
  Mikaël Salson authored May 25, 2018
  
  a8bd29d3
- germline/homo-sapiens-ikaros.g: Typo · ebd4aa64
  Mikaël Salson authored May 25, 2018
  
  ebd4aa64
- germline/homo-sapiens/ERG-as-{V,J}.fa: gene names · 16c0ce76
  Mathieu Giraud authored May 25, 2018
```
See #3229.
```
  16c0ce76
- core/segment.cpp: TMP, deactivate bottomTriangle · 2ae2b588
  Mathieu Giraud authored Feb 27, 2018
```
See #3066.
```
  2ae2b588
- should-get/ikaros-debre.should-get: !OUTPUT_FILE not !LOG · 4b6d8197
  Mikaël Salson authored May 25, 2018
  
  4b6d8197
- germline/homo-sapiens-ikaros.g, germline/homo-sapiens/: bikeshedding .fa names · 7d47ba81
  Mathieu Giraud authored May 25, 2018
  
  7d47ba81
- ikaros: add 15 sequences given from Debré hospital into should-get tests · 6fdccf1e
  flothoni authored Apr 17, 2018 and Mathieu Giraud committed May 25, 2018
  
  6fdccf1e
- update result waited for ikaros as test should-vdj · 6bd23d9d
  flothoni authored Apr 17, 2018 and Mathieu Giraud committed May 25, 2018
```
Not working for the momeent. 
need to use specific ikaros germline file.
```
  6bd23d9d
- ikaros: update germline sequences · 3696aaa8
  flothoni authored Apr 17, 2018 and Mathieu Giraud committed May 25, 2018
```
Move the limit of the gene to the breakpoint.
```
  3696aaa8
- add erg germline · a3a18619
  flothoni authored Mar 23, 2018 and Mathieu Giraud committed May 25, 2018
  
  a3a18619
- germline/homo-sapiens.g: Wrong path · 04ec0c4a
  Mikaël Salson authored Mar 09, 2018 and Mathieu Giraud committed May 25, 2018
  
  04ec0c4a
- should-get: add ikaros sequences for tests · f4d38f11
  Thonier Florian authored Mar 08, 2018 and Mathieu Giraud committed May 25, 2018
  
  f4d38f11
- should-get test : add test on ikaros sequences · 9349d694
  Thonier Florian authored Mar 07, 2018 and Mathieu Giraud committed May 25, 2018
  
  9349d694
- ikaros germline; create specific germline and move sequences into homo-sapiens directory · dbc37ac2
  Thonier Florian authored Feb 27, 2018 and Mathieu Giraud committed May 25, 2018
  
  dbc37ac2
- ikaros; add should-vdj-test sequence · 17296b36
  Thonier Florian authored Feb 27, 2018 and Mathieu Giraud committed May 25, 2018
  
  17296b36
- examples sequences ikaros · 82c5ff15
  Thonier Florian authored Feb 23, 2018 and Mathieu Giraud committed May 25, 2018
  
  82c5ff15
- ikaros : add germline infos in homo-sapiens.g · c3b4d127
  Thonier Florian authored Feb 22, 2018 and Mathieu Giraud committed May 25, 2018
  
  c3b4d127
- ikaros: add germline build from data of Robert Debré · dccae2c9
  Thonier Florian authored Feb 22, 2018 and Mathieu Giraud committed May 25, 2018
  
  dccae2c9
- backup.sh: Remove temporary SQL backup file · 3de42b3f
  Mikaël Salson authored May 11, 2018
  
  3de42b3f
18 May, 2018 1 commit
- Merge branch 'igrec_support' into 'dev' · ebd2a43c
  Mikaël Salson authored May 18, 2018
```
Add IgReC support

See merge request !188
```
  ebd2a43c
17 May, 2018 6 commits
- tests/controllers/{file,sample_set}.py update names/messages · 76592a65
  Ryan Herbert authored May 17, 2018
```
Rename a couple tests to match the controller names, and adjust the
expected messages on a couple of other tests to match the controllers.

See #3065
```
  76592a65
- tests/controllers/sample_set.py pass missing type param to form test · f63ed541
  Ryan Herbert authored May 17, 2018
```
See #3065
```
  f63ed541
- tests/controllers/{patient,sample_set}.py move confirm/delete tests · bb023fd5
  Ryan Herbert authored May 17, 2018
```
move the tests from patient to sample_set since sample_set is now the
owner of these functions.

See #3065
```
  bb023fd5
- tests/controllers/file.py pass correct variable name to edit controller · 864d9d89
  Ryan Herbert authored May 17, 2018
```
See #3065
```
  864d9d89
- tests/controllers/file.py testAdd load json · 01b9e2ac
  Ryan Herbert authored May 17, 2018
```
load the response string before attempting to treat it like a
dictionnary

See #3065
```
  01b9e2ac
- tests/controllers/file.py fix request vars for form tests · dd0f521f
  Ryan Herbert authored May 17, 2018
```
updates the tests to use the correct request variable formats (json)

See #3065
```
  dd0f521f