Commits · 4a907455f0295ac0fd00add68a45feb0b3ee6889 · vidjil / vidjil

19 Oct, 2018 8 commits
- db.py set group for two-step verification · 4a907455
  Ryan Herbert authored Oct 09, 2018
```
See #3367
```
  4a907455
- Merge branch 'feature-a/3575-warning-two-assignations' into 'dev' · dd14adbf
  Mikaël Salson authored Oct 19, 2018
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Feature a/3575 warning two assignations

Closes #3575

See merge request !333
```
  dd14adbf
- tests: add test · 021fc442
  Mathieu Giraud authored Oct 17, 2018
```
Closes #3575.
```
  021fc442
- core/segment.cpp: warn when there are equally probable assignations · 6b4fabc2
  Mathieu Giraud authored Oct 17, 2018
```
See #3575.
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  6b4fabc2
- doc/warnings.md: W69 · 5a5d92c2
  Mathieu Giraud authored Oct 17, 2018
```
See #3575.
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  5a5d92c2
- Merge branch 'feature-a/3358-output' into 'dev' · 656ddd25
  Mikaël Salson authored Oct 19, 2018
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Feature a/3358 output

See merge request !320
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  656ddd25
- doc/server.md: docker, how to update? · 07961c01
  Mathieu Giraud authored Oct 18, 2018
  
  07961c01
- doc/server.md: details, typos · 719de28e
  Mathieu Giraud authored Oct 18, 2018
  
  719de28e
18 Oct, 2018 23 commits
- Merge branch 'feature-s/3533-set_tokens_everywhere' into 'dev' · 1753759c
  Mathieu Giraud authored Oct 18, 2018
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Feature s/3533 set tokens everywhere

Closes #3533

See merge request !323
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  1753759c
- .gitlab-ci.yml docker TYPE you have to echo it... · f959661a
  Ryan Herbert authored Oct 18, 2018
  
  f959661a
- .gitlab-ci.yml fix docker_deploy TYPE assignment · 22fb65b0
  Ryan Herbert authored Oct 18, 2018
  
  22fb65b0
- Merge branch 'feature-s/init_public_tags' into 'dev' · 2bf8e676
  Ryan Herbert authored Oct 18, 2018
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vidjil_utils.py add default tags to db init

See merge request !335
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  2bf8e676
- tests/unit/controllers/tag.py update expected tags · 6d6a5164
  Ryan Herbert authored Oct 18, 2018
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We've added default tags to the database initialisation, so now they
will appear when requesting tags

See #3577
```
  6d6a5164
- Merge branch 'feature-s/fix-deploy-docker' into 'dev' · a875fcd2
  Mathieu Giraud authored Oct 18, 2018
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Feature s/fix deploy docker

See merge request !336
```
  a875fcd2
- .gitlab-ci.yml docker deploy get sha1 first 8 · 9e87a8a3
  Ryan Herbert authored Oct 18, 2018
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Only extract the first 8 characters from the commit sha1 reference
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  9e87a8a3
- .gitlab-ci.yml deploy docker fix syntax · a7b55e16
  Ryan Herbert authored Oct 17, 2018
  
  a7b55e16
- vidjil_utils.py init_db_helper fix var ref · db997c4d
  Ryan Herbert authored Oct 18, 2018
```
See #3577
```
  db997c4d
- vidjil_utils.py add default tags to db init · 6f929f98
  Ryan Herbert authored Oct 18, 2018
```
See #3577
```
  6f929f98
- tests: update tests · 932b88af
  Mathieu Giraud authored Oct 18, 2018
  
  932b88af
- vidjil.cpp: always use .toOutput(), even with non segmented sequences · 2ea82b2b
  Mathieu Giraud authored Oct 18, 2018
```
Following a discussion with @mikael-s.
We want to have meaningfull names when the sequence is not segmented.
See !320 (comment 126622)
```
  2ea82b2b
- core/segment.cpp: set clone name in FineSegmenter.toOutput() · de88a137
  Mathieu Giraud authored Oct 18, 2018
  
  de88a137
- vidjil.cpp: -c segment, format unique id · 2f78933e
  Mathieu Giraud authored Oct 18, 2018
  
  2f78933e
- tests: add tests · a34cd291
  Mathieu Giraud authored Oct 18, 2018
  
  a34cd291
- core/tools.{h,cpp}: string_of_int(..., pad_to_width) · 18797367
  Mathieu Giraud authored Oct 18, 2018
  
  18797367
- docker-compose.yml: by default, SSL certificates in vidjil-client/ssl/ · 7c89fe3a
  Mathieu Giraud authored Oct 18, 2018
  
  7c89fe3a
- vidjil-server/conf/defs.py: comments · eac97499
  Mathieu Giraud authored Oct 18, 2018
  
  eac97499
- doc/server.md: details · 72758624
  Mathieu Giraud authored Oct 18, 2018
  
  72758624
- doc/server.md: details · 16e4c912
  Mathieu Giraud authored Oct 18, 2018
  
  16e4c912
- doc/server.md: adding software, details · b592b503
  Mathieu Giraud authored Oct 18, 2018
  
  b592b503
- doc/server.md: SSL, details · d1786c0e
  Mathieu Giraud authored Oct 18, 2018
  
  d1786c0e
- Merge branch 'more_docker_docs' into 'dev' · 1d6dc183
  Mathieu Giraud authored Oct 18, 2018
```
More docker docs

See merge request !334
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  1d6dc183
17 Oct, 2018 2 commits
- doc/server.md add information for adding software · 148863b0
  Ryan Herbert authored Oct 17, 2018
```
See #3356
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  148863b0
- doc/server.md add paragraph to troubleshoot mysql · 79b9f2c0
  Ryan Herbert authored Oct 17, 2018
```
See #3565
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  79b9f2c0
16 Oct, 2018 7 commits
- server.md add information about ssl HTTP vs HTTPS · 352ca854
  Ryan Herbert authored Oct 16, 2018
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Clarify instructions about generating ssl certificates and when it is
necessary to replace "localhost" with an FQDN.

Also include information concerning the http configuration file
counterparts.
```
  352ca854
- Merge branch 'feature-s/3054-avoir-plus-d-informations-sur-pear' into 'dev' · cd9fb014
  Mathieu Giraud authored Oct 16, 2018
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Resolve "Avoir plus d'informations sur PEAR"

Closes #3054

See merge request !194
```
  cd9fb014
- tools/pear_structured_log: add and update tests · a7042415
  Thonier Florian authored Oct 11, 2018
```
link to #3054
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  a7042415
- tools/pear_structured_log; minor change in comment · c9d5d2d0
  Thonier Florian authored Oct 12, 2018
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link to 3054
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  c9d5d2d0
- pear_structured_log; return now percentage of reads merge/discarded/assembled · a424bef0
  Thonier Florian authored Oct 12, 2018
```
link to #3054
```
  a424bef0
- pear_structured_log; move some line outside of the for loop · 64e23fb6
  Thonier Florian authored Oct 11, 2018
  
  64e23fb6
- pear_structured_log; export now number value as int · b7238712
  Thonier Florian authored Oct 11, 2018
  
  b7238712