GitLab

If a sample was edited ad the new file had no pre-process, the status
from the previous pre-process would remain set, and in case of errors,
could sometimes block any runs.

mention #2343

The validation only checked for a file value in the upload_file2 field

heto authored Apr 04, 2017 and Mikaël Salson committed Apr 06, 2017

Typing errors, misspellings, etc.

See #2338.

If there need some space, we will do it through CSS
See #2338.

See #2338.

See #2338.

The sample_set/all page was redirecting to an inexistant page if not
logged in

The redirection after deleting a sample_set did not take the sample_type
into account.

call would append trailing question mark to a URL which did not have any
args. This was causing some issues with some redirects, namely for the
login page.

runs jshint on all javascript files in browser/js/

We need to update lines in list.js/segmenter.js.

(We still have #1763.)

This is necessary as process substitution is not available in sh.
However the command is portable (tested under Bash on FreeBSD)

In some cases we may not have access to /dev/stderr which causes an error.
This has been rewritten to redirect the output both to STDERR and STDIN. The
output which is on STDIN is still grep-ped to check the number of errors.

Deploy to $PROD_CLIENT_SERVER where the SSH config is as is:

Host app.vidjil.org
        StrictHostKeyChecking no
        UserKnownHostsFile=/dev/null
        User = bonsai-ci
        IdentityFile = ~/.ssh/bonsai-ci

See vdj#210

It also brings valuable information on nb of occurrences of the sequence

This is commented for now as it can be resource-consuming. We may want to
wait a bit before putting it in production for everyone.

SO that they can be displayed in the clone info page

Closes #2304.

See #2304.

Actually it is not a good idea that the client directly calls
the CloneDB. Indeed some tags from the CloneDB directly refers
to data on the server-side. Therefore the server can bring valuable
informations.

That's what we do know: the client calls a controller which calls
the CloneDB. The controller then adds other information useful to the client
(URL of the sample sets, name of the sample sets).