Commits · 42dfd8c9a04a932748f87399b6dfd98814c3574a · vidjil / vidjil

10 Jul, 2019 2 commits
- repseq_vdj.py: actual IgReC output has also one locus field · 42dfd8c9
  Mathieu Giraud authored Jul 10, 2019
  
  42dfd8c9
- repseq_vdj.py: IgReC_Result parser · 68d2334a
  Mathieu Giraud authored Jul 10, 2019
```
see #3950

Thanks to https://stackoverflow.com/a/8849771
```
  68d2334a
07 Mar, 2019 1 commit

repseq_vdj.py: Ensures that input respects the expected format · 977ed0a8

Mikaël Salson authored Mar 07, 2019

On each line we should have a + or - when segmented or an exclamation mark
when unsegmented.
A tab should always exist at least between the sequence name and the VDJ designation.

977ed0a8

06 Mar, 2019 1 commit
- repseq_vdj.py: -c designations · f8eb7a78
  Mathieu Giraud authored Mar 06, 2019
  
  f8eb7a78
27 Feb, 2019 1 commit
- repseq_vdj.py: VIDJIL_FINE with -2 · 9aa54572
  Mathieu Giraud authored Feb 27, 2019
```
We would like to test some unexpected recombinations.
Closes #3518.
```
  9aa54572
12 Feb, 2019 1 commit
- repseq_vdj.py: Why limiting to 100? · 0c680733
  Mikaël Salson authored Oct 25, 2018
```
When putting all files together, we have more than 100 sequences
```
  0c680733
18 Jun, 2018 1 commit
- tests/repseq_vdj.py: --header-sep for should-vdj tests · 5f5a9137
  Mathieu Giraud authored Jun 18, 2018
```
See #2732.
```
  5f5a9137
10 Jan, 2018 1 commit
- tests, should-vdj-to-tap.py, repseq_vdj.py: vidjil-algo · 440df9cd
  Mathieu Giraud authored Jan 10, 2018
  
  440df9cd
14 Feb, 2017 1 commit
- repseq_vdj.py: vidjil, update command line (-g, remove -i) · e46155a3
  Mathieu Giraud authored Feb 14, 2017
  
  e46155a3
15 Nov, 2016 2 commits
- repseq_vdj.py: igBlast .aln parsing · 41975657
  Mathieu Giraud authored Nov 15, 2016
  
  41975657
- repseq_vdj.py: .parse() output is used to fill .d · 9412c3ce
  Mathieu Giraud authored Nov 15, 2016
  
  9412c3ce
10 Nov, 2016 8 commits
- repseq_vdj.py, should-vdj-to-tap.py: VDJ_File() · 8effab39
  Mathieu Giraud authored Nov 10, 2016
```
New class VDJ_File() in repseq_vdj.py, responsible for loading and saving .vdj files
```
  8effab39
- should-vdj-to-tap.py: move Vidjil specific code to repseq_vdj.py · 8a42fa93
  Mathieu Giraud authored Nov 10, 2016
  
  8a42fa93
- repseq_vdj.py: move code, gathering MiXCR and IMGT/V-QUEST sections · 72637ad6
  Mathieu Giraud authored Nov 10, 2016
  
  72637ad6
- repseq_vdj.py: again more factorization, gather .vdj output in VDJ_Formatter() · 64e3b2ff
  Mathieu Giraud authored Nov 10, 2016
  
  64e3b2ff
- repseq_vdj.py: further factorization, gather V-QUEST parsing in IMGT_VQUEST_Result() · 89ba9ea7
  Mathieu Giraud authored Nov 10, 2016
  
  89ba9ea7
- repseq_vdj.py: renamed from imgt-to-vdj.py · e9dece6c
  Mathieu Giraud authored Nov 10, 2016
  
  e9dece6c
- imgt-to-vdj.py: fix 7732d520 · cedf1806
  Mathieu Giraud authored Nov 10, 2016
  
  cedf1806
- imgt-to-vdj.py: MiXCR and IMGT/VQUEST, AA JUNCTION · 715abb4a
  Mathieu Giraud authored Nov 10, 2016
  
  715abb4a
09 Nov, 2016 5 commits
- imgt-to-vdj.py: further factorization between IMGT and MiXCR wrappers · 7732d520
  Mathieu Giraud authored Nov 10, 2016
  
  7732d520
- imgt-to-vdj.py: MiXCR_Result(), now on best V/D/J hits · dc0a51ff
  Mathieu Giraud authored Nov 10, 2016
  
  dc0a51ff
- imgt-to-vdj.py: extract Result() from IMGT_VQUEST_Result() · 31ea5d70
  Mathieu Giraud authored Nov 10, 2016
  
  31ea5d70
- imgt-to-vdj.py: gene, parse detail · 8877bab6
  Mathieu Giraud authored Nov 10, 2016
  
  8877bab6
- imgt-to-vdj.py: prepare IMGT/V-QUEST output for should-vdj-to-tap.py · 984cf3b4
  Mathieu Giraud authored Nov 09, 2016
  
  984cf3b4