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Mikaël Salson authored Sep 08, 2017 and Mathieu Giraud committed Sep 14, 2017

The features we use seem to be working with g++ 4.8.

See #2615

Mikaël Salson authored Sep 08, 2017 and Mathieu Giraud committed Sep 14, 2017

With the newer JSON library the launched exception seems to be different.
However the current error (“cannot properly read”) is more meaningful than the
previous one (“cannot open .g file”). Therefore we prefer this new error
message and we don't change the exception catching in germline.cpp.

Mikaël Salson authored Sep 08, 2017 and Mathieu Giraud committed Sep 14, 2017

Now compiles with g++ 7 (and also with older versions)

See #2615

Thanks to the previous commit, see #1284.

Closes #1284.

Closes #2634.

See #2634.

We changed that months ago.

See #2615. We could be compatible, but this would mean dropping the support for gcc 4.8.

We must point to the library directory so that forcedep doesn't fail.

See #2613.

Missing inclusion needed by the C++ file (according to G++ 4.9 at least)

We don't use the client version of less, we use it server-side (less.js may be
ambiguous).

there were a couple issues with calls to in non-existant helper
instance, so now we have an instance to work with

See vdj#386.

See vdj#386.

See vdj#386.
We use the same stages for browser and algorithm, I'm not sure this is a good practice.
See also #1491.

Thanks to jshint

merge -- remove obsolete delta_min "-m" option

Closes #1674

See merge request !69

Mostly calls to Germline() constructors.
See #1674.

See #1674.

'-m' was not very clear (#1673) because... 'delta_min' was never used.
See #1674.

With @mikael-s, we recently discovered that this was not used at all for almost two years, c5c781ec.
See #1674.

See #2496.

Fixes #2496.

See #2496.

See #2496.

Great upcoming new feature, see #1925.
Developed by @aurelBZH. Thanks to @RyanHerb and @mikael-s for the refactoring sprint.

Ryan Herbert authored Aug 29, 2017 and Mathieu Giraud committed Aug 30, 2017

The germlines arrive in the segmenter after the clones, and therefore
did not benefit from the scrolling effect in order to display the
nameBox div.

Ryan Herbert authored Aug 29, 2017 and Mathieu Giraud committed Aug 30, 2017

This is to help display elements in the segmenter which may have a dodgy
CSS property and will only display once the page has been scrolled.

This could be reverted some day.