GitLab

Mathieu Giraud authored Apr 12, 2015 and Vidjil Team committed Apr 12, 2015

Digging into all *.vidjil files may take some time.

Mathieu Giraud authored Apr 12, 2015 and Vidjil Team committed Apr 12, 2015

controllers/patient.py: patient/stats, fill patient/custom with some data parsed in the results file

It was reversed twice.

Strangely, send_keys was not working before this.

Was broken since 19ebae45.

We can not anymore edit the tags.
This may be an interesting feature, but fixing the functional tests is more important

Light refactor.
The e-value is actually computed deep into each KmerSegmenter, so it is cleaner to store e-values at this step.
The MutliKmerSegmenter task is only to give the good multiplier.

- stanford*: one sequence in S22 is not segmented
- trd-dd2-dd3*: the short Dd2-Dd3 example has a evalue slightly above 1.0, we set -e 10
- chimera:  one failed test is now passing thanks to e-value

The e-value threshold just works. It is thus enabled by default in the next release.

This is the maximum length of the filename, and not the maximum size of the file :)

use old method (not so reliable either ...)  > TODO replace with something clean

patient.py: debug patient info > display info about the last run (mysql and sqlite don't use the same representative row when using groupby)