Commits · 1f5207683a6a5bc0e970dfde76a55af3dd35b586 · vidjil / vidjil

30 Mar, 2015 2 commits
- server : patient controller debug 'most used config' field (use config id instead of config name) · 1f520768
  Marc Duez authored Mar 30, 2015
  
  1f520768
- browser move data-box from index.html to com.js/list.js · bb347508
  Marc Duez authored Mar 30, 2015
  
  bb347508
27 Mar, 2015 1 commit
- server : improve patient list speed · bfa129f4
  Marc Duez authored Mar 27, 2015
  
  bfa129f4
26 Mar, 2015 6 commits
- Merge branch 'master' of git+ssh://scm.gforge.inria.fr//gitroot/vidjil/vidjil · 5efb64e4
  Marc Duez authored Mar 26, 2015
  
  5efb64e4
- server : update views · 855e8d0c
  Marc Duez authored Mar 26, 2015
  
  855e8d0c
- server : db.py > compatibility with mysql // remove init db · 6155a06b
  Marc Duez authored Mar 26, 2015
  
  6155a06b
- server : patient.py > TODO improve index(too many subquery) · 116db4f4
  Marc Duez authored Mar 26, 2015
  
  116db4f4
- server : default.py > add init server command · 30a9412f
  Marc Duez authored Mar 26, 2015
  
  30a9412f
- server : admin controller repair db and backyup command · 5b366a4f
  Marc Duez authored Mar 26, 2015
  
  5b366a4f
25 Mar, 2015 7 commits
- graph.js, scatterPlot.js, css: toggle visibility of this bar depending on the choosen axis · 8e87d0a1
  Mathieu Giraud authored Mar 25, 2015
```
.setOtherVisibility()
```
  8e87d0a1
- graph.js, css: light bar under the other selected time/sample · 03af760c
  Mathieu Giraud authored Mar 25, 2015
```
.mobilPrevious
```
  03af760c
- scatterPlot.js, axis.js: 'otherSize' axis, size on the other selected time/sample · 497b03cc
  Mathieu Giraud authored Mar 25, 2015
```
This was surprisingly easy to implement, with a simple call to getSize(this.m.tOther)
```
  497b03cc
- model.js: remember in .tOther the previously selected time/sample · 8d3917ff
  Mathieu Giraud authored Mar 25, 2015
  
  8d3917ff
- segmenter.js: reorder things to render correctly mutation highlighting in aligned sequences · c9ba91db
  Mathieu Giraud authored Mar 25, 2015 and Vidjil Team committed Mar 25, 2015
```
Before the Sequences are rendered (.toString):
  - the .aligned flag has to be set
  - all the sequences (including the reference one, first_clone) have to be loaded
```
  c9ba91db
- segmenter.js: add the mutation <span> during .toString() rendering · 2051f178
  Mathieu Giraud authored Mar 25, 2015 and Vidjil Team committed Mar 25, 2015
  
  2051f178
- segmenter.js: remember the clone at the top of the segmenter · e0820ffd
  Mathieu Giraud authored Mar 25, 2015
  
  e0820ffd
21 Mar, 2015 1 commit
- fasta.py: parses Fasta file · 871934e2
  Mathieu Giraud authored Mar 01, 2015
```
Old commit, go with e4df4530, I forgot to push it some weeks ago.
```
  871934e2
20 Mar, 2015 4 commits
- index.html debug menu · 4e7e10e4
  Marc Duez authored Mar 20, 2015
  
  4e7e10e4
- Germline: Add rattus norvegicus to the retrieved germlines · 64c46d8a
  Mikaël Salson authored Mar 20, 2015
  
  64c46d8a
- vidjil_utils.py: loglinks, priority to scheduler_task · 7e812d45
  Mathieu Giraud authored Mar 20, 2015 and Vidjil Team committed Mar 20, 2015
  
  7e812d45
- core/windowExtractor.cpp: progress bar · 8c62e107
  Mathieu Giraud authored Mar 20, 2015 and Vidjil Team committed Mar 20, 2015
  
  8c62e107
19 Mar, 2015 19 commits
- .travis.yml: email notifications · 6e888cc1
  Mathieu Giraud authored Mar 19, 2015
  
  6e888cc1
- core/windowExtractor.cpp: progress bar · a2a405a2
  Mathieu Giraud authored Mar 19, 2015 and Vidjil Team committed Mar 19, 2015
  
  a2a405a2
- doc/: move API help from browser.org to browser-dev.org, detail · 73c107d0
  Mathieu Giraud authored Mar 19, 2015
  
  73c107d0
- browser-dev.org: details · eeea391c
  Mathieu Giraud authored Mar 19, 2015
  
  eeea391c
- browser-dev.org : doc · 96659af5
  Marc Duez authored Mar 19, 2015
  
  96659af5
- doc/browser-dev.org: browser development doc, draft · 1abef133
  Mathieu Giraud authored Mar 19, 2015
  
  1abef133
- small_example.html: some interaction · 2a52bc55
  Mathieu Giraud authored Mar 19, 2015
  
  2a52bc55
- small_example.html: example data · 9f548701
  Mathieu Giraud authored Mar 19, 2015
  
  9f548701
- task.py: add log messages for failed launches · 756ba614
  Mathieu Giraud authored Mar 19, 2015 and Vidjil Team committed Mar 19, 2015
  
  756ba614
- vidjil_utils.py: loglinks, tests · c64092bf
  Mathieu Giraud authored Mar 19, 2015 and Vidjil Team committed Mar 19, 2015
  
  c64092bf
- vidjil_utils.py: loglinks, 'raw' log format · be965db7
  Mathieu Giraud authored Mar 19, 2015 and Vidjil Team committed Mar 19, 2015
  
  be965db7
- admin/log.html: display file name · 9ff39bed
  Mathieu Giraud authored Mar 19, 2015 and Vidjil Team committed Mar 19, 2015
  
  9ff39bed
- css: 'overflow' for .console-div · 1475d0a3
  Mathieu Giraud authored Mar 19, 2015 and Vidjil Team committed Mar 19, 2015
  
  1475d0a3
- controllers/admin.py, views/admin/log.html: 'raw' log format · debc9172
  Mathieu Giraud authored Mar 19, 2015 and Vidjil Team committed Mar 19, 2015
  
  debc9172
- modules/defs.py.sample: defs.BASENAME_OUT_VIDJIL_ID stores the basename of the output files · 16205a0b
  Vidjil Team authored Mar 19, 2015
```
This is used in several places in models/task.py and in modules/vidjil_utils.py.
```
  16205a0b
- vidjil_utils.py: loglinks, tests · 1a93d384
  Mathieu Giraud authored Mar 17, 2015 and Vidjil Team committed Mar 19, 2015
  
  1a93d384
- vidjil_utils.py: loglinks, scheduler task · 8b18fb65
  Mathieu Giraud authored Mar 17, 2015 and Vidjil Team committed Mar 19, 2015
  
  8b18fb65
- core/representative.cpp: add comments · 219c6704
  Mathieu Giraud authored Mar 19, 2015
  
  219c6704
- core/{kmerstore.h,representative.cpp}: allow extended nucleotides for representative · 3b88c113
  Mathieu Giraud authored Mar 19, 2015
```
b0e3045d ignored all k-mers with extended nucleotides. However, in the representative
computation, one needs to have matching k-mers in every case, even when there are N
or other extended nucleotides.
```
  3b88c113