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This was causing an issue where comparing samples that were not
associated to any patients would provoke a server error.

This reverts commit 25c2c31a.

See #2403

generic axis does not use the second index parameter, causing
disparities with the other numerical axis classes since both types make
use of the same method for computing bar labels.

Therefore performing any necessary calculations upstream from the
function is more robust, and therefore more consistent.

fixes #2419

We don't want our jshint runs to depend on the user's local
configuration, so passing a fixed file will give us consistent results.

Closes #2272

Refactor and tests by @heto, see merge request !27.
Closes #2093.

Modifications in scatterPlot.js were already done but overwritten by merge

Téo Vasseur authored Apr 19, 2017 and Mathieu Giraud committed May 10, 2017

See #2093

.setTimeout and assert.async are needed to overcome Javascript's asynchronism : this allows to wait for the scatterplot/svg to be fully loaded before getting its width and height, and making the tests.

Also, 'IGH' and 'TRG' labels are inverted for some reason, which caused the 'side' clones to be found in the top right corner (rather than the bottom right corner, as in the actual client).
This was not seen at first while writing the tests, and might be helpful to know for further tests or corrections !

Téo Vasseur authored Apr 10, 2017 and Mathieu Giraud committed May 10, 2017

Split .stopSelector so as to test it more easily

Follows 851b7931.

See merge request !12

Mikaël Salson authored Mar 23, 2017 and Mathieu Giraud committed May 10, 2017

Before something could have failed before launching or when launching the
process but this would not have been properly logged. By expanding the scope
of the try/except we increase the chances of catching such a problem.
The exception is re-raised afterwards

Téo Vasseur authored May 09, 2017 and Mathieu Giraud committed May 10, 2017

Apparently caused by merge

See merge request !26

Mikaël Salson authored Apr 21, 2017 and Mathieu Giraud committed May 10, 2017

See #2383.
This launched some shortcuts while using
some web browser features.

See #2417.

See #1227.

See #2418.

See #2418.

Closes #2416

It was incorrect in the FloatAxis class

Bar charts were forgotten in the application of the numerical axis
subclasses.
This allows the bar chart labels to be formatted.

Some commits seem to have been lost or forgotten at some point in
regards to the positionning of the 'undefined' (?) values label.
And we had identical labels for all positions on numerical axes. The
position of the 'undefined' label was also reset at some point as well
as the label offset.

This should sort things outs and reposition all labels correctly with
the correct text.

A great upcoming feature by @heto. People will soon be able to customize the columns in list.js/segmenter.js.

Closes #2175, #2398, and #2395
See merge request !22

closes #2409