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Ryan Herbert authored Jun 07, 2018 and Mikaël Salson committed Jul 18, 2018

This is mostly for Python3 compatibility. The default mode seems to
differ between Pyton 2 and 3, causing and issue when attempting to run
fuse with Pyton 3

Ryan Herbert authored Jun 07, 2018 and Mikaël Salson committed Jul 18, 2018

The object here being some optimisations to increase the performance of
fuse.py by using VidjilParser to extract only the data that is relevant
to the context we are in, before loading the data into Python objects.

See #3234

Ryan Herbert authored Jun 07, 2018 and Mikaël Salson committed Jul 18, 2018

it was there for testing purposes only.

Ryan Herbert authored Jun 07, 2018 and Mikaël Salson committed Jul 18, 2018

resets the parser prefixes and the writer's buffer

Ryan Herbert authored Jun 07, 2018 and Mikaël Salson committed Jul 18, 2018

makes use of buffering and predicate checking to exclude or include data
to the export based on a comparison function passed when setting desired
prefixes.

See #3235,#2240

Ryan Herbert authored Jun 07, 2018 and Mikaël Salson committed Jul 18, 2018

Adds a system where data can be put aside and is not written to the
output file unless requested. Also return the extracted data string at
the end of write.

See #2240

Ryan Herbert authored May 29, 2018 and Mikaël Salson committed Jul 18, 2018

a basic version of a tool to validate and parse/extract data from large
vidjil files.
See #2240

See #3364.

See #3364.

Closes #3348.

See #3348.

Touching it updated its last modification date which triggered the recompilation of vidjil.cpp.
We don't touch it anymore. Therefore the file may not exist and the diff may fail. We just ignore
error messages. In such a case the mv will be executed and the file will then exist.

Fixes #3309

should@0ac73002

should@a621f768

should@84fe86ce

Close #1941.

flothoni authored Mar 30, 2018 and Mathieu Giraud committed Jun 04, 2018

link to #1941

'{...,...}' shell expansion does not work on all shells. See #3197.

Interaction between old 'e' and new 'b'.
See #3116.

You will be missed.

8e79b8a

From http://gitlab.inria.fr/vidjil/should (2c8e3509a)
See #3105. Closes #3167.

See #3039.

Homogeneize with algo/ and germline/.
See #3036 and #3039.

See #3039.

See !73.

See #1847.