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Default to algo (which is similar to the former behaviour). The default rule
was test_browser which was likely to fail as it required xvfb-run

Completes c661b652.
See #2630.

See #2630.

See #2630.
We should check whether all rules are still used.

See #2611.

Follows 53be475d. Our test job uses the coverage so we need to remove -O0 from
the compilation option even when we compute the coverage.

.should_get → .should-get

`README.org` is somewhat long, we may help people in finding what they are looking for.
Completes ac1027f0, see #2237.

Closes #2237

make browser (for instance) could not have been launched because the directory
browser existed.

When the global test suite is passing, individual failed tests (counted in SHOULD_*_EXPECTED_FAILS)
can be marked as 'TODO' to make continuous integration happy

We prefer to have clean snapshots.

We run should-vdj-to-tap.py unbuffered (python -u) to have the best tee experience.

The *.data in germline subdirectories were not included.

Commits ad0fe37e and 5815bf0d were very lazy, they are reverted.
It is safer to still check all these tests, allowing some failed tests corresponding
to recent or challenging .should-vdj sequences.

Te results of the tests were carefully compared to the ones before ad0fe37e/5815bf0d.
The difference (6 tests) come from some missing D segments due to 0c3cd0e.

The other files are generated through a 'make' in tools/tests

Follows 7b955792

(Same comment than ad0fe37e)
These tests were extended with many sequences that should be further checked.
Moreover they will be soon moved to their own git repository.
We have to find a new way to measure the quality of the build
even when some tests fail.

https://github.com/eddyxu/cpp-coveralls/issues/64

We don't want to re-generate the recombinations each time we launch the
process. It would certainly be convenient to have the recombinations
generated when the files do not exist. But I didn't succeed to specify a
joker in the dependance list.

Random recombinations with random deletions and insertions at the
junction and mismatches in the sequence (1%)

Since 43d2a3fe, errors in make_tools were ignored.
The syntax is now ugly, but it works.