GitLab

Implements affine gaps by storing three matrices, B, Bins and Bdel.

Our github sources are now under the 'vidjil' organization.

With multi-systems, there may be very interesting clones hiding below the previous top 10.

> hack to allow admin to register new user
> move post_register function from models to default controller

Re-organization, equivalent code

Not everything is tested yet in WindowsStorage.
In particular getSample, getLabel, setIdToAll are not tested

If you would know the two most frequent affectations in a read, what could you do ?

Not using a pointer creates some problems with KmerSegmenter.
We should have a copy constructor in KmerSegmenter but it is a pain in the ***.

Not using pointers makes several copies of the same object. However the copies share the
same pointer to a KmerAffectAnalyser and that's the problem. When one of the copy is
deleted, its destructor is called which will delete the KmerAffectAnalyser and the other
copies won't have access to it, and it will also generate an error when the copies will try
to delete the KmerAffectAnalyser.

This has been solved by using pointers to KmerSegmenter everywhere.

More logical progression: total, segmented, segmented on the selected systems

The 'selected' info is now always the number of reads analyzed by the program.

m.reads.segmented is updated when one selects some systems by computeReadsSum()
(Perhaps this dynamic value should be called something else...)