GitLab

database.js / file controller : add a client side form validator for file upload (check the number of file provided/pre_process)

numerical field by 'val' key
textual field by 'info' key.

Added an array of fields that should not be copied over to the model.
This is a quick fix rather than restructuring the whole json.

All our outputs are 1-based.

VJ/VDJ .fa headers with position lists are displayed through a more generic way,
also able to handle VDDJ or other things.

This test, introduced in69ea8e6f, is challenging.

Commits ad0fe37e and 5815bf0d were very lazy, they are reverted.
It is safer to still check all these tests, allowing some failed tests corresponding
to recent or challenging .should-vdj sequences.

Te results of the tests were carefully compared to the ones before ad0fe37e/5815bf0d.
The difference (6 tests) come from some missing D segments due to 0c3cd0e.

We may expect that some tests fails.

Since 353497b7, both seq2 and seq4 are taken into account into this representative quality computation.

This column provide direct links to results.

A new feature by @duez: we can now report the average quality in the representative sequence
of each clone. The quality is computed over Vidjil's window, shared between all reads of the clone.