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More docker docs

See merge request !334

See #3356

See #3565

Clarify instructions about generating ssl certificates and when it is
necessary to replace "localhost" with an FQDN.

Also include information concerning the http configuration file
counterparts.

Resolve "Avoir plus d'informations sur PEAR"

Closes #3054

See merge request !194

link to #3054

link to 3054

link to #3054

link to #3054

With this script, we have the possibility to get structured datas from the pear preprocess to use them into the server, for quality, warning, ...
link to #3054 #3049 #3154

See vdj#530. To be decided and documented.

Closes #3549.

This will allow to more reliably add percentages that otherwise would give
meaningless results.

In the test we now have 497 reads out of 786861.

.gitlab-ci.yml docker tag reverse date and sha1

See merge request !326

For easier sorting
See #3551

.gitlab-ci.yml docker func tests restore http files

See merge request !324

when making the volumes for the conff directory the default, we were
overriding the baked-in http config files with the default https config
files.

Feature s/3489 fix multi upload edit

See merge request !300

Docker pre deploy

See merge request !304

Gestion des germlines et config dans docker

Closes #3521

See merge request !317

.gitlab-ci.yml also remove reporter images

See merge request !318

Resolve "Test serveurs unitaires cassés depuis 2 mois : 'init_db_helper' is not defined"

Closes #3470 and #3548

See merge request !321

Fixes #3470

Since 66a1edd4

This reverts merge request !196