1. 04 Mar, 2020 1 commit
    • Mikaël Salson's avatar
      testAffectAnalyser: Don't pass the empty string in parameter · 9644eff6
      Mikaël Salson authored
      As the parameter is a reference, it may cause some problems if it is
      optimized out at some point (or something else, I won't pretend mastering
      compiler optimizations). Instead we pass a variable in parameter and instead
      of an empty string we give a string whose length is the same as the affectation
      string.
      
      This was causing issues with clang-4.0 and clang-6.0.
      
      See !612
      9644eff6
  2. 28 Feb, 2019 1 commit
  3. 20 Jun, 2018 3 commits
  4. 18 Jun, 2018 3 commits
  5. 18 Jan, 2018 2 commits
  6. 17 Jan, 2018 3 commits
  7. 15 Sep, 2017 1 commit
  8. 07 Jul, 2017 1 commit
    • Mikaël Salson's avatar
      algo/: Refactor Fasta to BioReader · 3d8ff242
      Mikaël Salson authored
      We now have an abstract class to deal with biological sequence files. This
      will allow to more easily manage different file types.
      
      This commit only reorganizes the code so that we will be able to add a BAM
      reader easily. Functionnally the code should be equivalent to its previous
      version.
      
      Some functions that were not used have been removed.
      
      The operator>> has been removed as it was only used in unit testing. This
      operator is not convenient as having the filename may be useful to reopen the
      file or to know its extension, to guess the filetype.
      
      See #2016
      3d8ff242
  9. 14 Feb, 2017 1 commit
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  20. 07 Jul, 2014 1 commit