1. 07 Apr, 2015 1 commit
  2. 03 Apr, 2015 1 commit
  3. 01 Apr, 2015 2 commits
  4. 11 Mar, 2015 1 commit
  5. 09 Mar, 2015 4 commits
  6. 06 Feb, 2015 3 commits
  7. 05 Nov, 2014 5 commits
  8. 04 Nov, 2014 1 commit
  9. 30 Oct, 2014 4 commits
  10. 22 Oct, 2014 1 commit
    • Mikaël Salson's avatar
      Tools: extract_basename() function · 9e39f012
      Mikaël Salson authored
      Extracts the basename of a path. There is a basename() function in C but takes char *
      (not even const char*), which is not convenient with string in C++.
      And basename() doesn't remove extension.
      
      Unit tests added.
      9e39f012
  11. 25 Jul, 2014 3 commits
  12. 07 Jul, 2014 1 commit
  13. 22 May, 2014 1 commit
  14. 16 Apr, 2014 1 commit
  15. 15 Apr, 2014 1 commit
  16. 14 Apr, 2014 1 commit
  17. 20 Mar, 2014 1 commit
  18. 20 Feb, 2014 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2014.02 · 113ee8ee
      Mathieu Giraud authored
      	* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp)
      	* Removed unused html output
      	* Better json output (core/json.cpp)
      	* Updated main stdout, with representative sequence for each clone
      	* Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost)
      	* Bugs closed
      113ee8ee
  19. 07 Oct, 2013 1 commit
    • Mikaël Salson's avatar
      Vidjil: release 2013.10 · 2cbd3725
      Mikaël Salson authored
      	* Better heuristic, segments more reads (core/segment.cpp)
      	* Better and faster selection of representative read (vidjil.cpp, core/read_chooser.cpp)
      	* Better display of reason of non-segmenting reads
      	* New normalization against a standard (-Z) (core/labels.cpp)
      	* New experimental lazy_msa multiple aligner
      	* New .json output
      	* New unit tests
      	* Bugs closed
      2cbd3725
  20. 03 Jul, 2013 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2013.07 · de4c48e0
      Mathieu Giraud authored
      	* New selection of representative read (core/read_chooser.cpp)
      	* Faster spaced seed computation (core/tools.cpp)
      	* New unit tests
      	* Bugs closed
      de4c48e0
  21. 26 Apr, 2013 1 commit