- 05 Oct, 2018 6 commits
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Ryan Herbert authored
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Ryan Herbert authored
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Ryan Herbert authored
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Ryan Herbert authored
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Ryan Herbert authored
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Ryan Herbert authored
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- 28 Sep, 2018 1 commit
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Mikaël Salson authored
Feature c/3325 display codons Closes #3325 See merge request !296
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- 27 Sep, 2018 12 commits
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Mathieu Giraud authored
Close #3325.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
See #3325. Could be improved, there are string manipulations here.
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Mathieu Giraud authored
See #3485. Same technique than in 8af03769.
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Mathieu Giraud authored
See #3325.
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Mathieu Giraud authored
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Mathieu Giraud authored
(could be later bikesheded)
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Mathieu Giraud authored
Resolve "Extraire/tester isProductive/referencePhase dans clone.js" Closes #3483 See merge request !295
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Mikaël Salson authored
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Mikaël Salson authored
This is a bit tricky, we should warn coders properly. And we test that this is actually the case. See c3bbaf4c
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Mikaël Salson authored
See #3483
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- 26 Sep, 2018 21 commits
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Mikaël Salson authored
Feature c/2056 display synonymous mutations Closes #2056 See merge request !232
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Mikaël Salson authored
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Mathieu Giraud authored
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Mathieu Giraud authored
See !232 (comment 121298).
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As get_codons may return codons with gaps inside, testing for the codon length is not enough we must first clean the codons by removing the common gaps. However the codons must not be cleaned to early so that positions are properly counted. See #2056
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Make sure they are handled correctly
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Otherwise it induces unvoluntary frameshifts. Therefore the total number of characters returned in both lists must be equal and must also be equal to the number of characters in the original sequences. See #2056
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A whole border is just a test. To be modified. See #2056
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Now spanify_mutation just do some display and doesn't compute anything (basic) anymore. We use get_mutations to be able to know where the mutations are. Fix #2056
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Those two functions are useful to detect synonymous mutations. We also have fallbacks in case we don't want to split the sequence in codons. See #2056
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Mathieu Giraud authored
Display CDR3 in production Closes #3330 See merge request !294
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Mathieu Giraud authored
Merge branch 'doc/3175-documenter-le-processus-de-a-a-z-pour-deployer-sur-un-serveur-sous-docker' into 'dev' Improve Docker and server documentation (server.org/md) See merge request !285
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Replays 2a263ddf.
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For deploying images to a server that does not have access to internet or hub.docker.com Replays 9a6421a9.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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