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Mikaël Salson authored Feb 09, 2021 and marc duez committed Mar 05, 2021

Fix #3554, inspired by vdj#727

db.import_from_csv() takes an open file as argument, and not just a file
path

Fixes #1847.

This code was used once when migrating the database to sample sets. See 11d4c64f and #2284.
This is now dangerous, nobody should click on that link.

uptimerobot uses this route to check the server health, and we don't
want uptimerobot to be admin so....

With the new existance checks in the auth methods, we can add existance
checks to controllers while also adding missing permissions checks.

In the debian packages all git revision information has been removed.
Therefore, for the time being we will simply display 'not versioned' if
git res-parse HEAD causes an exception

Added some carriage returns to showLog in order to make the js logs
easier to read

Retrieve user data is now no longer a route, due to locking when running
such a long controller method

Added fused_file and analysis_file fixing to sample_set_fixer

admin.py: add sample_set_fixer() > create all missing sample set/membership for patient and sequence file

Mikaël Salson authored Jun 18, 2015 and Vidjil Team committed Jun 18, 2015

This prevents an ambiguity because filter() is called in advanced_filter()

Thanks to landscape.io

Mikaël Salson authored Apr 13, 2015 and Vidjil Team committed Apr 13, 2015

The number of columns may be lower than expected (particularly when
debugging with messages containing line returns). The debug message
must still be displayed without errors.

Even if the format is expected to be Vidjil's we check if we have
an expected number of fields.

We have many things to see.

Mathieu Giraud authored Mar 16, 2015 and Vidjil Team committed Mar 16, 2015

This adds a 'format' optional argument to db.call('admin/log').

Mathieu Giraud authored Mar 16, 2015 and Vidjil Team committed Mar 16, 2015

We should use regexps here.

Mathieu Giraud authored Mar 14, 2015 and Vidjil Team committed Mar 14, 2015

The default call to XML() should be safe enough to prevent XSS attacks.