GitLab

See #3039.

Homogeneize with algo/ and germline/.
See #3036 and #3039.

See #3036.

See #3036 and #3039.

See #3036.

See #3039.

Feature branches are now named 'feautre-[gacw]+/.*',
such as in 'feature-ga/', 'feature-ac/' or 'feature-cs/' (deprecates 'feature-w').

cc @RyanHerb @mikael-s

Additional icons for the server

See merge request !162

Feature g/3035 gapped j downstream

Closes #3035

See merge request !150

.gitlab-ci.yml: deploy to production

See merge request !53

much like the reset method that exists in model.js, reset the critical
data of an instance. model.reset calls reset on all associated views.

See #2847

database.js remove call to initClones in displayResults

Closes #3071

See merge request !173

This call was causing issues when some controllers were returning error
messages since it was attempting to initClones while displaying the
return message even if the model had not yet been loaded. This lead to
the ajax spinner to spin indefinitely.

See #3071

See #3037

See #3037

makes logs available outside of containers

Following discussions in !53

The variables used for loading a run from a URL were outdated, rendring
the feature non-functionnal.

Adds alias 'patient' to 'patient_id' and 'run' to 'run_id'.
The renaming of url paramters broke URLs that contained the legacy
parameters 'patient' and 'run'. Adding an alias allows us to maintain
the new parameters while allowing older URLs to function.

See #3062

vidjil.less allow overflow-x for info-msg

Closes #3057

See merge request !161

in some cases there can be a lot of samples to view in the infoBox of a
clone, so we need a way of scrolling to see this information.

See #3057

sample_sets.stats()

See merge request !155

clarity !

See #3041

mostly a failsafe in case of bad data. In a normal environment this
should not matter.

See #3041

instead of having one button per config, just a single button that
extracts for all configs should suffice.

See #3041

if config is not selected then send all results_files

See #3041

See #3041

Feature s/server unit tests

Closes #3061

See merge request !160

We want our testRunner script to exit with an error code if tests
failed for gitlab-ci

what seems to be some recent changes to pyDAL are causing our method for
copying fields to fail since we are trying to assign a field to a new
table while it is already assigned to it's parent. Cloning the field
allows us to have a new field assigned to the new table.