Commit fe03b6d1 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: testing multiple -V/-J options on simulated Dd2 and Dd3 recombinations

parent 08182493
!LAUNCH: ../../vidjil -k 6 -w 20 -V ../../germline/TRDV.fa -V ../../germline/TRDD2-01.fa -J ../../germline/TRDD3-01.fa -J ../../germline/TRDJ.fa ../../data/trd-dd2-dd3.fa
$ Segment all 5 reads, thanks to TRDD2 and TRDD3
1: segmented 5 reads .100..
$ Find the good number of 20-windows
1: found 3 20-windows
>TRDV2*03-TRDJ1*01
gcaccatcagagagagatgaagggtcttactactgtgcctgtgacacc
acaccgataaactcatctttggaaaaggaacccgtgtgactgtggaaccaa
>TRDD2*01-TRDJ1*01
ccttcctac
acaccgataaactcatctttggaaaaggaacccgtgtgactgtggaaccaa
>TRDD2*01-TRDD3*01
ccttcctac
actgggggatacg
>TRDV3*01-TRDD3*01
atctctccagtaaggactgaagacagtgccacttactactgtgcctttag
actgggggatacg
>TRDV3*01-TRDJ4*01
atctctccagtaaggactgaagacagtgccacttactactgtgcctttag
ccagacccctgatctttggcaaaggaacctatctggaggtacaacaac
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