tests: testing multiple -V/-J options on simulated Dd2 and Dd3 recombinations

algo/tests/trd-dd2-dd3.should_get

+!LAUNCH: ../../vidjil -k 6 -w 20 -V ../../germline/TRDV.fa -V ../../germline/TRDD2-01.fa -J ../../germline/TRDD3-01.fa -J ../../germline/TRDJ.fa ../../data/trd-dd2-dd3.fa
+
+$ Segment all 5 reads, thanks to TRDD2 and TRDD3
+1: segmented 5 reads .100..
+
+$ Find the good number of 20-windows
+1: found 3 20-windows
+
+

data/trd-dd2-dd3.fa

+>TRDV2*03-TRDJ1*01
+gcaccatcagagagagatgaagggtcttactactgtgcctgtgacacc
+acaccgataaactcatctttggaaaaggaacccgtgtgactgtggaaccaa
+
+>TRDD2*01-TRDJ1*01
+ccttcctac
+acaccgataaactcatctttggaaaaggaacccgtgtgactgtggaaccaa
+
+>TRDD2*01-TRDD3*01
+ccttcctac
+actgggggatacg
+
+>TRDV3*01-TRDD3*01
+atctctccagtaaggactgaagacagtgccacttactactgtgcctttag
+actgggggatacg
+
+>TRDV3*01-TRDJ4*01
+atctctccagtaaggactgaagacagtgccacttactactgtgcctttag
+ccagacccctgatctttggcaaaggaacctatctggaggtacaacaac
+