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vidjil
vidjil
Commits
fb5ae0ed
Commit
fb5ae0ed
authored
Apr 28, 2015
by
Mikaël Salson
Browse files
Tests: Test that a VdJa sequence is segmented the same way on both strands
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b3badeb3
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algo/tests/vidjil_revcomp_VdJa.should_get
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fb5ae0ed
!LAUNCH: ../../vidjil -i -g ../../germline/ -r 1 -c clones ../../data/revcomp-VdJa.fa
$ Just one window found
f1:==> found 1 ..-windows
$ Just one clone found
f1:==> 1 clones
$ Two reads segmented in VdJa
1:VdJa -> 2
$ segmentation for the main clone
f1:TRDV1.01 5//3 TRDD2.01 1//7 TRAJ29
data/revcomp-VdJa.fa
0 → 100644
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fb5ae0ed
>seq
ATGCAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGTCCTAAGGAAACACACCTCTTGTCTTTGGAAAGGGCACAAGACTTTCTGTGATTGCAAGTAAGTGTTTCTAGCCATCCTTGATTTTGATCAGCAATGGCTTCTTCCCTTGAATTATTTTTCAGTGTACCTAGAATGCTTTTGCC
>seq-rc
GGCAAAAGCATTCTAGGTACACTGAAAAATAATTCAAGGGAAGAAGCCATTGCTGATCAAAATCAAGGATGGCTAGAAACACTTACTTGCAATCACAGAAAGTCTTGTGCCCTTTCCAAAGACAAGAGGTGTGTTTCCTTAGGACCCAAGAGCACAAAAGTACTTTGCTGAATCTTCTAGCTGTAAGGCTGAAATGGTTAAGGCGACGGATTTCGCTGCTTTCTTGAAGTTGACAGAATAGCGACCACTTTTTGCAT
\ No newline at end of file
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