Commit fadd4348 authored by Mikaël Salson's avatar Mikaël Salson

germline.cpp: Increase delta_max for TRD+ recombinations.

Based on PAN data the delta_max can be much higher than what we previously set.
parent 5e813234
......@@ -181,13 +181,13 @@ void MultiGermline::build_incomplete_set(string path)
germlines.push_back(germline);
// DD2-DD3
germline = new Germline("TRD+", 'd', path + "/TRDD2-01.fa", "", path + "/TRDJ.fa", -10, 20);
germline = new Germline("TRD+1", 'd', path + "/TRDD2-01.fa", "", path + "/TRDJ.fa", -10, 60);
germline->new_index("#########");
germlines.push_back(germline);
germline = new Germline("TRD+", 'd', path + "/TRDV.fa", "", path + "/TRDD3-01.fa", -10, 20);
germline = new Germline("TRD+2", 'd', path + "/TRDV.fa", "", path + "/TRDD3-01.fa", -10, 50);
germline->new_index("#########");
germlines.push_back(germline);
germline = new Germline("TRD+", 'd', path + "/TRDD2-01.fa", "", path + "/TRDD3-01.fa", -10, 20);
germline = new Germline("TRD+3", 'd', path + "/TRDD2-01.fa", "", path + "/TRDD3-01.fa", -10, 50);
germline->new_index("#########");
germlines.push_back(germline);
......
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