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vidjil
vidjil
Commits
f9b86544
Commit
f9b86544
authored
May 23, 2019
by
Mathieu Giraud
Browse files
germline, add a simple test on Gallus Gallus germline
link to
#3910
parent
5b626cc6
Pipeline
#79813
passed with stages
in 14 minutes and 3 seconds
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germline/tests/should-get-tests/gallus-gallus.should-get
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f9b86544
!NO_LAUNCHER:
!LAUNCH: (cd $VIDJIL_DIR/germline ; cat gallus-gallus/IGHV.fa | tr '|' '#' )
$ Found sequence of Gallus gallus Red Jungle fowl
1: .*#IGHV1-1.01#Gallus gallus_Red Jungle fowl#
$ Found sequence of Gallus gallus
1: .*#IGHV1-21.*#Gallus gallus#
$ Found a sequence part of IGHV1-1*01
i1: tgggtgcgacaggcgcccggcaaggggctggagtgggtcgctggtattggcagcagt
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