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vidjil
vidjil
Commits
f8eb7a78
Commit
f8eb7a78
authored
Mar 06, 2019
by
Mathieu Giraud
Browse files
repseq_vdj.py: -c designations
parent
0e8df91a
Changes
1
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Inline
Side-by-side
algo/tests/repseq_vdj.py
View file @
f8eb7a78
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@@ -250,7 +250,7 @@ def header_igblast_results(ff_fasta, ff_igblast):
### Vidjil
VIDJIL_FINE
=
'{directory}/vidjil-algo --header-sep "#" -c
segment
-2 -3 -d -g {directory}/germline/homo-sapiens.g %s >> %s'
VIDJIL_FINE
=
'{directory}/vidjil-algo --header-sep "#" -c
designations
-2 -3 -d -g {directory}/germline/homo-sapiens.g %s >> %s'
VIDJIL_KMER
=
'{directory}/vidjil-algo -w 20 --header-sep "#" -b out -c windows -uuuU -2 -g {directory}/germline/homo-sapiens.g %s > /dev/null ; cat out/out.segmented.vdj.fa out/out.unsegmented.vdj.fa >> %s'
def
should_results_from_vidjil_output
(
f_log
):
...
...
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