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vidjil
vidjil
Commits
f78c6fc3
Commit
f78c6fc3
authored
Dec 17, 2015
by
Mathieu Giraud
1
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core/segment.h, vidjil.cpp: rename unsegmentation messages to "only V/5'" and "only J/3'"
parent
7ca4471e
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algo/core/segment.h
algo/core/segment.h
+1
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algo/vidjil.cpp
algo/vidjil.cpp
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algo/core/segment.h
View file @
f78c6fc3
...
...
@@ -61,7 +61,7 @@ const char* const segmented_mesg[] = { "?",
"SEG"
,
"SEG_+"
,
"SEG_-"
,
"UNSEG too short"
,
"UNSEG strand"
,
"UNSEG too few V/J"
,
"UNSEG only V
"
,
"UNSEG only J
"
,
"UNSEG too few V/J"
,
"UNSEG only V
/5'"
,
"UNSEG only J/3'
"
,
"UNSEG < delta_min"
,
"UNSEG ambiguous"
,
"UNSEG too short w"
,
}
;
...
...
algo/vidjil.cpp
View file @
f78c6fc3
...
...
@@ -1040,6 +1040,7 @@ int main (int argc, char **argv)
replace
(
s
.
begin
(),
s
.
end
(),
' '
,
'_'
);
replace
(
s
.
begin
(),
s
.
end
(),
'/'
,
'_'
);
replace
(
s
.
begin
(),
s
.
end
(),
'<'
,
'_'
);
replace
(
s
.
begin
(),
s
.
end
(),
'\''
,
'_'
);
string
f_unsegmented_detail
=
out_dir
+
f_basename
+
"."
+
s
+
UNSEGMENTED_DETAIL_FILENAME
;
cout
<<
" ==> "
<<
f_unsegmented_detail
<<
endl
;
...
...
Mathieu Giraud
@magiraud
mentioned in commit
c5f71c1e
·
Mar 14, 2017
mentioned in commit
c5f71c1e
mentioned in commit c5f71c1e899009841a98b3572e909a67fee96648
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