Commit f786619d authored by Mathieu Giraud's avatar Mathieu Giraud

algo/vidjil.cpp: corrects -h on -u/-uu/-uuu meaning

parent 3fa9817e
......@@ -238,9 +238,10 @@ void usage(char *progname, bool advanced)
cerr << "Detailed output per read (generally not recommended, large files, but may be used for filtering, as in -uu -X 1000)" << endl
<< " -U output segmented reads (in " << SEGMENTED_FILENAME << " file)" << endl
<< " -u output unsegmented reads (in " << UNSEGMENTED_FILENAME << " file)" << endl
<< " -uu output unsegmented reads, gathered by unsegmentation cause, except for very short and 'too few V/J' reads (in *" << UNSEGMENTED_DETAIL_FILENAME << " files)" << endl
<< " -uuu output unsegmented reads, gathered by unsegmentation cause, all reads (in *" << UNSEGMENTED_DETAIL_FILENAME << " files) (use only for debug)" << endl
<< " -u output unsegmented reads, gathered by unsegmentation cause, except for very short and 'too few V/J' reads (in *" << UNSEGMENTED_DETAIL_FILENAME << " files)" << endl
<< " -uu output unsegmented reads, gathered by unsegmentation cause, all reads (in *" << UNSEGMENTED_DETAIL_FILENAME << " files) (use only for debug)" << endl
<< " -uuu output unsegmented reads, all reads, including a " << UNSEGMENTED_FILENAME << " file (use only for debug)" << endl
<< " -K output detailed k-mer affectation on all reads (in " << AFFECTS_FILENAME << " file) (use only for debug, for example -KX 100)" << endl
<< endl
......
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