Commit f63fd911 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: update tests

parent daa4c4ae
!LAUNCH: ../../vidjil -r 5 -o out2 -u -U -v -G ../../germline/IGH ../../data/Stanford_S22.fasta ; tail out2/Stanford_S22.segmented.vdj.fa out2/Stanford_S22.unsegmented.fa
!LAUNCH: ../../vidjil -r 5 -o out2 -u -U -v -G ../../germline/IGH ../../data/Stanford_S22.fasta ; tail out2/Stanford_S22.segmented.vdj.fa ; grep not out2/Stanford_S22.unsegmented.fa
# Testing uncommon and debug options
$ verbose (-v)
2:auditioned sequences
$ segmented.fa (-U)
1:>lcl.FLN1FA001BCDD7.1. .* seed
1:>lcl.FLN1FA001BCDD7.1. .* seed IGH
$ unsegmented.fa (-u)
1:>lcl.FLN1FA002PX5D6.1. not segmented
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