algo/Makefile: compile tools

algo/Makefile

@@ -42,6 +42,9 @@ CREATE_VERSION_GIT_H := $(shell test -x ./create-git-version-h.sh && ./create-gi
 .PHONY: all core lib clean forcedep
 
 all: $(VIDJIL) $(ALIGN_CGI) $(SIMILARITY_CGI) $(SIMILARITY_TOOL)
+	$(MAKE) -C $(TOOLDIR)
+
+base: $(VIDJIL)
 
 ###
 

algo/tools/Makefile

@@ -13,7 +13,7 @@ go: vdj_assign align
 all: $(EXEC)
 
 $(EXEC): %: %.o 
-	$(MAKE) -C .. OPTIM="$(OPTIM)"
+	$(MAKE) -C .. base OPTIM="$(OPTIM)"
 	$(CC) -I .. -o $@ $^ $(LIBCORE) $(LDLIBS)
 
 clean: