Commit f3c6d2b8 authored by Mathieu Giraud's avatar Mathieu Giraud

vdj_assign: takes only the interesting part of the Fasta header

parent 68107039
...@@ -57,8 +57,8 @@ int main(int argc, const char** argv) ...@@ -57,8 +57,8 @@ int main(int argc, const char** argv)
string read = argv[1]; string read = argv[1];
string germline = argv[2]; string germline = argv[2];
Fasta Vgenes(germline+"V.fa"); Fasta Vgenes(germline+"V.fa", 2, "|");
Fasta Jgenes(germline+"J.fa"); Fasta Jgenes(germline+"J.fa", 2, "|");
Fasta interestingV = extractInterestingGenes(Vgenes, argv[3]); Fasta interestingV = extractInterestingGenes(Vgenes, argv[3]);
Fasta interestingJ = extractInterestingGenes(Jgenes, argv[4]); Fasta interestingJ = extractInterestingGenes(Jgenes, argv[4]);
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