Commit f16dcf0a authored by Mathieu Giraud's avatar Mathieu Giraud

tests/should-vdj-to-tap.py: run should-vdj tests with '-3'

parent 5a387852
......@@ -28,7 +28,7 @@ from collections import defaultdict
import os
import argparse
VIDJIL_FINE = '{directory}/vidjil -X 100 -# "#" -c segment -i -d -g {directory}/germline %s >> %s'
VIDJIL_FINE = '{directory}/vidjil -X 100 -# "#" -c segment -i -3 -d -g {directory}/germline %s >> %s'
VIDJIL_KMER = '{directory}/vidjil -# "#" -b out -c windows -uU -2 -i -g {directory}/germline %s > /dev/null ; cat out/out.segmented.vdj.fa out/out.unsegmented.vdj.fa >> %s'
parser = argparse.ArgumentParser(formatter_class=argparse.RawTextHelpFormatter)
......
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