Commit f07f96ce authored by Mathieu Giraud's avatar Mathieu Giraud

js/scatterPlot.js: rename 'clone length/coverage' to 'clone consensus length/coverage'

Note that the meaningfullness of these axis is discuted, especially in the case of constant read length.
parent 59a2159c
......@@ -123,7 +123,7 @@ function ScatterPlot(id, model) {
label:"allele J"
},
"sequenceLength" : {
label: "clone length",
label: "clone consensus length",
fct: function(cloneID) {return self.m.clone(cloneID).getSequenceLength()}
},
"GCContent" : {
......@@ -140,7 +140,7 @@ function ScatterPlot(id, model) {
fct: function(cloneID) {return self.m.clone(cloneID).seg["cdr3"].length}
},
"coverage": {
label: "clone coverage",
label: "clone consensus coverage",
fct: function(cloneID){return self.m.clone(cloneID).coverage},
min: 0,
max: 1,
......@@ -241,12 +241,12 @@ function ScatterPlot(id, model) {
// "graph" : { "mode": "plot", "x" : "tsneX", "y": "tsneY"},
// "graph_by_system" : { "mode": "plot", "x" : "tsneX_system", "y": "tsneY_system"},
"V/N length" : { "mode": "plot", "x" : "gene_v", "y": "n"},
"clone length / locus" : { "mode": "plot", "x": "sequenceLength", "y" : "locus"},
"clone length / GC content " : { "mode": "plot", "x": "sequenceLength", "y" : "GCContent"},
"clone coverage / GC content " : { "mode": "plot", "x": "coverage", "y" : "GCContent"},
"clone consensus length / locus" : { "mode": "plot", "x": "sequenceLength", "y" : "locus"},
"clone consensus length / GC content " : { "mode": "plot", "x": "sequenceLength", "y" : "GCContent"},
"clone consensus coverage / GC content " : { "mode": "plot", "x": "coverage", "y" : "GCContent"},
// "V/abundance" : { "mode": "plot", "x" : "gene_v", "y": "Size"},
"V distribution" : { "mode": "bar", "x" : "gene_v", "y": "gene_j"},
"Clone length distribution" : { "mode": "bar", "x" : "sequenceLength", "y": "gene_v"},
"clone consensus length distribution" : { "mode": "bar", "x" : "sequenceLength", "y": "gene_v"},
"N length distribution" : { "mode": "bar", "x" : "n", "y": "gene_v"},
"compare two samples" : { "mode": "plot", "x" : "Size", "y": "otherSize"}
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment