Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
vidjil
Project overview
Project overview
Details
Activity
Releases
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Issues
1,711
Issues
1,711
List
Boards
Labels
Service Desk
Milestones
Merge Requests
86
Merge Requests
86
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Operations
Operations
Incidents
Environments
Packages & Registries
Packages & Registries
Container Registry
Analytics
Analytics
CI / CD
Repository
Value Stream
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
vidjil
vidjil
Commits
edf7cd83
Commit
edf7cd83
authored
Jul 22, 2019
by
Mikaël Salson
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
vidjil-format.md: Do not use 'seq' with CDR3 or junction
parent
c4b7c8ba
Pipeline
#88090
passed with stages
in 6 minutes and 6 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
2 additions
and
0 deletions
+2
-0
doc/vidjil-format.md
doc/vidjil-format.md
+2
-0
No files found.
doc/vidjil-format.md
View file @
edf7cd83
...
...
@@ -317,6 +317,8 @@ In the `.analysis` file, this section is intended to describe some specific clon
//
// JUNCTION//CDR3 should be stored that way (in fields called "junction" of "cdr3"),
// its productivity must be stored in a boolean field called "productive".
// "seq" field should not be filled for cdr3 or junction (it is extracted from the sequence itself).
// However a "aa" field may be used to give the amino-acid translation of the cdr3 or junction.
"
somefeature
"
:
{
"
start
"
:
56
,
"
stop
"
:
61
,
"
seq
"
:
"
ACTGTA
"
,
"
val
"
:
145.7
,
"
info
"
:
"
analyzed with xyz
"
},
// Numerical or textual features concerning all the sequence or its analysis (such as 'evalue')
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment