Commit ecb92708 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

vidjil.cpp: correct output messages with or without --no-vidjil

fixes 828d7e09
parent 689270ed
Pipeline #139054 passed with stages
in 42 minutes and 28 seconds
...@@ -4,7 +4,7 @@ $ There are three clones in the .vidjil ...@@ -4,7 +4,7 @@ $ There are three clones in the .vidjil
3:"id" 3:"id"
$ Correct output message $ Correct output message
1:"data file for the web platform" 1:Vidjil web application
!LAUNCH: $VIDJIL_DIR/$EXEC --no-vidjil -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta ; cat out/Stanford_S22.vidjil !LAUNCH: $VIDJIL_DIR/$EXEC --no-vidjil -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta ; cat out/Stanford_S22.vidjil
...@@ -12,7 +12,7 @@ $ There are no clones in the .vidjil ...@@ -12,7 +12,7 @@ $ There are no clones in the .vidjil
0:"id" 0:"id"
$ Correct output message $ Correct output message
1:"only metadata" 1:only metadata
!LAUNCH: rm out/Stanford_S22.tsv ; $LAUNCHER $VIDJIL_DIR/$EXEC $EXTRA -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv !LAUNCH: rm out/Stanford_S22.tsv ; $LAUNCHER $VIDJIL_DIR/$EXEC $EXTRA -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv
......
...@@ -1747,7 +1747,7 @@ int main (int argc, char **argv) ...@@ -1747,7 +1747,7 @@ int main (int argc, char **argv)
//$ Output .vidjil json //$ Output .vidjil json
cout << " ==> " << f_json ; cout << " ==> " << f_json ;
if (no_vidjil) if (!no_vidjil)
{ {
cout << "\t(data file for the Vidjil web application)" << endl; cout << "\t(data file for the Vidjil web application)" << endl;
} }
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment