algo/tests: rename *.should-get tests to *.should

see #3206

algo/tests: rename .should-get tests to .should
see #3206
ebb59d2f · Mathieu Giraud · 2ddbea56 · ebb59d2f · ebb59d2f · ebb59d2f
Commit ebb59d2f authored Apr 18, 2019 by Mathieu Giraud
123 changed files
--- a/algo/tests/bugs/bug20130617.should-get
+++ b/algo/tests/bugs/bug20130617.should-get
--- a/algo/tests/bugs/bug20131218.should-get
+++ b/algo/tests/bugs/bug20131218.should-get
--- a/algo/tests/bugs/bug20141024.should-get
+++ b/algo/tests/bugs/bug20141024.should-get
--- a/algo/tests/bugs/bug20150604.should-get
+++ b/algo/tests/bugs/bug20150604.should-get
--- a/algo/tests/bugs/bug20150629.should-get
+++ b/algo/tests/bugs/bug20150629.should-get
--- a/algo/tests/bugs/bug20160121.should-get
+++ b/algo/tests/bugs/bug20160121.should-get
--- a/algo/tests/bugs/bug2107.should-get
+++ b/algo/tests/bugs/bug2107.should-get
--- a/algo/tests/bugs/bug2249.should-get
+++ b/algo/tests/bugs/bug2249.should-get
--- a/algo/tests/bugs/bug2910.should-get
+++ b/algo/tests/bugs/bug2910.should-get
--- a/algo/tests/bugs/bug3009.should-get
+++ b/algo/tests/bugs/bug3009.should-get
--- a/algo/tests/should-get-tests/00-clean-memory-on-exit.should-get
+++ b/algo/tests/should-get-tests/00-clean-memory-on-exit.should-get
--- a/algo/tests/should-get-tests/00-no-compilation-warning.should-get
+++ b/algo/tests/should-get-tests/00-no-compilation-warning.should-get
--- a/algo/tests/should-get-tests/10-md5-data.should-get
+++ b/algo/tests/should-get-tests/10-md5-data.should-get
--- a/algo/tests/should-get-tests/10-md5-germline.should-get
+++ b/algo/tests/should-get-tests/10-md5-germline.should-get
--- a/algo/tests/should-get-tests/11-get-saved-germline-id.should-get
+++ b/algo/tests/should-get-tests/11-get-saved-germline-id.should-get
--- a/algo/tests/should-get-tests/3344-bad-filtering.should-get
+++ b/algo/tests/should-get-tests/3344-bad-filtering.should-get
--- a/algo/tests/should-get-tests/airr-S22.should-get
+++ b/algo/tests/should-get-tests/airr-S22.should-get
--- a/algo/tests/should-get-tests/airr-X5.should-get
+++ b/algo/tests/should-get-tests/airr-X5.should-get
--- a/algo/tests/should-get-tests/alternative_genes.should-get
+++ b/algo/tests/should-get-tests/alternative_genes.should-get
--- a/algo/tests/should-get-tests/ambiguous_representative.should-get
+++ b/algo/tests/should-get-tests/ambiguous_representative.should-get
--- a/algo/tests/should-get-tests/ambiguous_representative2.should-get
+++ b/algo/tests/should-get-tests/ambiguous_representative2.should-get
--- a/algo/tests/should-get-tests/cd-trimmed.should-get
+++ b/algo/tests/should-get-tests/cd-trimmed.should-get
--- a/algo/tests/should-get-tests/cd.should-get
+++ b/algo/tests/should-get-tests/cd.should-get
--- a/algo/tests/should-get-tests/cdr3-stopcodon.should-get
+++ b/algo/tests/should-get-tests/cdr3-stopcodon.should-get
--- a/algo/tests/should-get-tests/cdr3-vdj-fa.should-get
+++ b/algo/tests/should-get-tests/cdr3-vdj-fa.should-get
--- a/algo/tests/should-get-tests/cgi-align.should-get
+++ b/algo/tests/should-get-tests/cgi-align.should-get
--- a/algo/tests/should-get-tests/cgi-align2.should-get
+++ b/algo/tests/should-get-tests/cgi-align2.should-get
--- a/algo/tests/should-get-tests/cgi-align3.should-get
+++ b/algo/tests/should-get-tests/cgi-align3.should-get
--- a/algo/tests/should-get-tests/chimera-2549.should-get
+++ b/algo/tests/should-get-tests/chimera-2549.should-get
--- a/algo/tests/should-get-tests/chimera-fake-2.should-get
+++ b/algo/tests/should-get-tests/chimera-fake-2.should-get
--- a/algo/tests/should-get-tests/chimera-fake-D.should-get
+++ b/algo/tests/should-get-tests/chimera-fake-D.should-get
--- a/algo/tests/should-get-tests/chimera-fake-VJ-germlines-trim.should-get
+++ b/algo/tests/should-get-tests/chimera-fake-VJ-germlines-trim.should-get
--- a/algo/tests/should-get-tests/chimera-fake-VJ-germlines.should-get
+++ b/algo/tests/should-get-tests/chimera-fake-VJ-germlines.should-get
--- a/algo/tests/should-get-tests/chimera-fake-VJ.should-get
+++ b/algo/tests/should-get-tests/chimera-fake-VJ.should-get
--- a/algo/tests/should-get-tests/chimera-fake-half.should-get
+++ b/algo/tests/should-get-tests/chimera-fake-half.should-get
--- a/algo/tests/should-get-tests/chimera-fake.should-get
+++ b/algo/tests/should-get-tests/chimera-fake.should-get
--- a/algo/tests/should-get-tests/chimera.should-get
+++ b/algo/tests/should-get-tests/chimera.should-get
--- a/algo/tests/should-get-tests/clones_lec.should-get
+++ b/algo/tests/should-get-tests/clones_lec.should-get
--- a/algo/tests/should-get-tests/clones_simul.should-get
+++ b/algo/tests/should-get-tests/clones_simul.should-get
--- a/algo/tests/should-get-tests/clones_simul_cluster.should-get
+++ b/algo/tests/should-get-tests/clones_simul_cluster.should-get
--- a/algo/tests/should-get-tests/colinear-D7-27--J1.should-get
+++ b/algo/tests/should-get-tests/colinear-D7-27--J1.should-get
--- a/algo/tests/should-get-tests/combo-grep-reads.should-get
+++ b/algo/tests/should-get-tests/combo-grep-reads.should-get
--- a/algo/tests/should-get-tests/common-V-D.should-get
+++ b/algo/tests/should-get-tests/common-V-D.should-get
--- a/algo/tests/should-get-tests/doc-examples.should-get
+++ b/algo/tests/should-get-tests/doc-examples.should-get
--- a/algo/tests/should-get-tests/erg-debre.should-get
+++ b/algo/tests/should-get-tests/erg-debre.should-get
--- a/algo/tests/should-get-tests/error-deprecated-options.should-get
+++ b/algo/tests/should-get-tests/error-deprecated-options.should-get
--- a/algo/tests/should-get-tests/error-unknown-option.should-get
+++ b/algo/tests/should-get-tests/error-unknown-option.should-get
--- a/algo/tests/should-get-tests/example_mouse.should-get
+++ b/algo/tests/should-get-tests/example_mouse.should-get
--- a/algo/tests/should-get-tests/filter.should-get
+++ b/algo/tests/should-get-tests/filter.should-get
--- a/algo/tests/should-get-tests/gzip.should-get
+++ b/algo/tests/should-get-tests/gzip.should-get
--- a/algo/tests/should-get-tests/ikaros-debre.should-get
+++ b/algo/tests/should-get-tests/ikaros-debre.should-get
--- a/algo/tests/should-get-tests/labels-grep-reads.should-get
+++ b/algo/tests/should-get-tests/labels-grep-reads.should-get
--- a/algo/tests/should-get-tests/labels-json.should-get
+++ b/algo/tests/should-get-tests/labels-json.should-get
--- a/algo/tests/should-get-tests/large-N.should-get
+++ b/algo/tests/should-get-tests/large-N.should-get
--- a/algo/tests/should-get-tests/large-r.should-get
+++ b/algo/tests/should-get-tests/large-r.should-get
--- a/algo/tests/should-get-tests/multi-complete.should-get
+++ b/algo/tests/should-get-tests/multi-complete.should-get
--- a/algo/tests/should-get-tests/multi-i-complete.should-get
+++ b/algo/tests/should-get-tests/multi-i-complete.should-get
--- a/algo/tests/should-get-tests/multi-i-short.should-get
+++ b/algo/tests/should-get-tests/multi-i-short.should-get
--- a/algo/tests/should-get-tests/multi-segment.should-get
+++ b/algo/tests/should-get-tests/multi-segment.should-get
--- a/algo/tests/should-get-tests/multi-short-affects.should-get
+++ b/algo/tests/should-get-tests/multi-short-affects.should-get
--- a/algo/tests/should-get-tests/multi-short.should-get
+++ b/algo/tests/should-get-tests/multi-short.should-get
--- a/algo/tests/should-get-tests/multi-tiny-segment.should-get
+++ b/algo/tests/should-get-tests/multi-tiny-segment.should-get
--- a/algo/tests/should-get-tests/no-cdr3-json.should-get
+++ b/algo/tests/should-get-tests/no-cdr3-json.should-get
--- a/algo/tests/should-get-tests/no-cdr3.should-get
+++ b/algo/tests/should-get-tests/no-cdr3.should-get
--- a/algo/tests/should-get-tests/overlap-stdout.should-get
+++ b/algo/tests/should-get-tests/overlap-stdout.should-get
--- a/algo/tests/should-get-tests/quality-json.should-get
+++ b/algo/tests/should-get-tests/quality-json.should-get
--- a/algo/tests/should-get-tests/read-config.should-get
+++ b/algo/tests/should-get-tests/read-config.should-get
--- a/algo/tests/should-get-tests/representative-N.should-get
+++ b/algo/tests/should-get-tests/representative-N.should-get
--- a/algo/tests/should-get-tests/representative-min-cover.should-get
+++ b/algo/tests/should-get-tests/representative-min-cover.should-get
--- a/algo/tests/should-get-tests/representative-random-read-chooser.should-get
+++ b/algo/tests/should-get-tests/representative-random-read-chooser.should-get
--- a/algo/tests/should-get-tests/revcomp.should-get
+++ b/algo/tests/should-get-tests/revcomp.should-get
--- a/algo/tests/should-get-tests/segment_S22.should-get
+++ b/algo/tests/should-get-tests/segment_S22.should-get
--- a/algo/tests/should-get-tests/segment_simul.should-get
+++ b/algo/tests/should-get-tests/segment_simul.should-get
--- a/algo/tests/should-get-tests/segmentation-D-read-number.should-get
+++ b/algo/tests/should-get-tests/segmentation-D-read-number.should-get
--- a/algo/tests/should-get-tests/sequences_of_interest.should-get
+++ b/algo/tests/should-get-tests/sequences_of_interest.should-get
--- a/algo/tests/should-get-tests/several-g.should-get
+++ b/algo/tests/should-get-tests/several-g.should-get
--- a/algo/tests/should-get-tests/somatic.should-get
+++ b/algo/tests/should-get-tests/somatic.should-get
--- a/algo/tests/should-get-tests/stanford-X100-sampled.should-get
+++ b/algo/tests/should-get-tests/stanford-X100-sampled.should-get
--- a/algo/tests/should-get-tests/stanford-debug.should-get
+++ b/algo/tests/should-get-tests/stanford-debug.should-get
--- a/algo/tests/should-get-tests/stanford-detailed.should-get
+++ b/algo/tests/should-get-tests/stanford-detailed.should-get
--- a/algo/tests/should-get-tests/stanford-fuse.should-get
+++ b/algo/tests/should-get-tests/stanford-fuse.should-get
--- a/algo/tests/should-get-tests/stanford-germlines.should-get
+++ b/algo/tests/should-get-tests/stanford-germlines.should-get
--- a/algo/tests/should-get-tests/stanford-json-limits.should-get
+++ b/algo/tests/should-get-tests/stanford-json-limits.should-get
--- a/algo/tests/should-get-tests/stanford-json.should-get
+++ b/algo/tests/should-get-tests/stanford-json.should-get
--- a/algo/tests/should-get-tests/stanford-k14.should-get
+++ b/algo/tests/should-get-tests/stanford-k14.should-get
--- a/algo/tests/should-get-tests/stanford-labels-W.should-get
+++ b/algo/tests/should-get-tests/stanford-labels-W.should-get
--- a/algo/tests/should-get-tests/stanford-labels.should-get
+++ b/algo/tests/should-get-tests/stanford-labels.should-get
--- a/algo/tests/should-get-tests/stanford-no-cd.should-get
+++ b/algo/tests/should-get-tests/stanford-no-cd.should-get
--- a/algo/tests/should-get-tests/stanford-segment-x100-first.should-get
+++ b/algo/tests/should-get-tests/stanford-segment-x100-first.should-get
--- a/algo/tests/should-get-tests/stanford-t1.should-get
+++ b/algo/tests/should-get-tests/stanford-t1.should-get
--- a/algo/tests/should-get-tests/stanford-vidjil-to-fasta.should-get
+++ b/algo/tests/should-get-tests/stanford-vidjil-to-fasta.should-get
--- a/algo/tests/should-get-tests/stanford-w100.should-get
+++ b/algo/tests/should-get-tests/stanford-w100.should-get
--- a/algo/tests/should-get-tests/stanford-wall.should-get
+++ b/algo/tests/should-get-tests/stanford-wall.should-get
--- a/algo/tests/should-get-tests/stanford-x100-first.should-get
+++ b/algo/tests/should-get-tests/stanford-x100-first.should-get
--- a/algo/tests/should-get-tests/stanford-xyz-yall.should-get
+++ b/algo/tests/should-get-tests/stanford-xyz-yall.should-get
--- a/algo/tests/should-get-tests/stanford-xyz.should-get
+++ b/algo/tests/should-get-tests/stanford-xyz.should-get
--- a/algo/tests/should-get-tests/stanford.should-get
+++ b/algo/tests/should-get-tests/stanford.should-get
--- a/algo/tests/should-get-tests/tabs-in-output.should-get
+++ b/algo/tests/should-get-tests/tabs-in-output.should-get
--- a/algo/tests/should-get-tests/tools-align-trd.should-get
+++ b/algo/tests/should-get-tests/tools-align-trd.should-get
--- a/algo/tests/should-get-tests/tools-align.should-get
+++ b/algo/tests/should-get-tests/tools-align.should-get
--- a/algo/tests/should-get-tests/tools-similarity.should-get
+++ b/algo/tests/should-get-tests/tools-similarity.should-get
--- a/algo/tests/should-get-tests/tools-vdj-assign-direct-input.should-get
+++ b/algo/tests/should-get-tests/tools-vdj-assign-direct-input.should-get
--- a/algo/tests/should-get-tests/tools-vdj-assign.should-get
+++ b/algo/tests/should-get-tests/tools-vdj-assign.should-get
--- a/algo/tests/should-get-tests/trb-only-VJ.should-get
+++ b/algo/tests/should-get-tests/trb-only-VJ.should-get
--- a/algo/tests/should-get-tests/trd-dd2-dd3-complete.should-get
+++ b/algo/tests/should-get-tests/trd-dd2-dd3-complete.should-get
--- a/algo/tests/should-get-tests/trd-dd2-dd3-incomplete.should-get
+++ b/algo/tests/should-get-tests/trd-dd2-dd3-incomplete.should-get
--- a/algo/tests/should-get-tests/trd-dd2-dd3.should-get
+++ b/algo/tests/should-get-tests/trd-dd2-dd3.should-get
--- a/algo/tests/should-get-tests/unsegmentation-causes-u.should-get
+++ b/algo/tests/should-get-tests/unsegmentation-causes-u.should-get
--- a/algo/tests/should-get-tests/unsegmentation-causes.should-get
+++ b/algo/tests/should-get-tests/unsegmentation-causes.should-get
--- a/algo/tests/should-get-tests/vidjil-custom-cost.should-get
+++ b/algo/tests/should-get-tests/vidjil-custom-cost.should-get
--- a/algo/tests/should-get-tests/vidjil-error-incorrect-germlines.should-get
+++ b/algo/tests/should-get-tests/vidjil-error-incorrect-germlines.should-get
--- a/algo/tests/should-get-tests/vidjil-error-no-germline.should-get
+++ b/algo/tests/should-get-tests/vidjil-error-no-germline.should-get
--- a/algo/tests/should-get-tests/vidjil-error-w-small.should-get
+++ b/algo/tests/should-get-tests/vidjil-error-w-small.should-get
--- a/algo/tests/should-get-tests/vidjil-h-examples.should-get
+++ b/algo/tests/should-get-tests/vidjil-h-examples.should-get
--- a/algo/tests/should-get-tests/vidjil-help-advanced.should-get
+++ b/algo/tests/should-get-tests/vidjil-help-advanced.should-get
--- a/algo/tests/should-get-tests/vidjil-help.should-get
+++ b/algo/tests/should-get-tests/vidjil-help.should-get
--- a/algo/tests/should-get-tests/vidjil-small-w.should-get
+++ b/algo/tests/should-get-tests/vidjil-small-w.should-get
--- a/algo/tests/should-get-tests/vidjil-warning-z.should-get
+++ b/algo/tests/should-get-tests/vidjil-warning-z.should-get
--- a/algo/tests/should-get-tests/vidjil_long_segment.should-get
+++ b/algo/tests/should-get-tests/vidjil_long_segment.should-get
--- a/algo/tests/should-get-tests/vidjil_revcomp_VdJa.should-get
+++ b/algo/tests/should-get-tests/vidjil_revcomp_VdJa.should-get
--- a/algo/tests/should-get-tests/vidjil_revcomp_s22.should-get
+++ b/algo/tests/should-get-tests/vidjil_revcomp_s22.should-get
--- a/algo/tests/should-get-tests/warning-all.should-get
+++ b/algo/tests/should-get-tests/warning-all.should-get
--- a/algo/tests/should-get-tests/what-V.should-get
+++ b/algo/tests/should-get-tests/what-V.should-get