Commit eba01d46 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

tests: testing tools/vdj-assign

See #2552.
parent 8d1468ed
!LAUNCH: $VIDJIL_DIR/algo/tools/vdj_assign - $VIDJIL_DIR/germline/homo-sapiens/IGH V J "IGHV3-15*01" "IGHJ4*02" <<< "CGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTA"
$ Compute correct coordinates
1: read .* 42 .* 47
1: IGHV3-15.01 .* 271 .* 277
1: IGHJ4.02 .* 34 .* 40
!LAUNCH: $VIDJIL_DIR/algo/tools/vdj_assign CCGAGGACACAGCCGTGTATTTTTTCCCCTAGTGGTTGCCCCTTTGACTACTGGGGCCAGGGAACC $VIDJIL_DIR/germline/homo-sapiens/IGH V J IGHV IGHJ
$ Compute correct coordinates
1: read .* 1 .* 60
1: IGHV3-15.01 .* 270 .* 330
1: IGHJ4.02 .* -35 .* 25
$ V is green, two times
2: 42mCGAGGACACAGCCGTGTATT
$ J is yellow, two times
2: 43mCTTTGACTACTGGGGCCAGG
$ N is not colored
1: TTTTCCCCTAGTGGTTGCCC
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