Commit e9dece6c authored by Mathieu Giraud's avatar Mathieu Giraud

repseq_vdj.py: renamed from imgt-to-vdj.py

parent cedf1806
'''
Parses output of various RepSeq programs.
Takes either:
- a .fa file, a _Summary.txt file as produced by IMGT/V-QUEST
- or a results file produced by MiXCR
and creates a .vdj file to be checked by should-vdj-to-tap.py
python imgt-to-vdj.py data-curated/curated_IG.fa data-curated/curated_ig_Summary.txt > data-curated/imgt-IG.vdj
python imgt-to-vdj.py data-curated/curated_TR.fa data-curated/curated_tr_Summary.txt > data-curated/imgt-TR.vdj
python imgt-to-vdj.py data-curated/mixcr.results > data-curated/mixcr.vdj
python repseq_vdj.py data-curated/curated_IG.fa data-curated/curated_ig_Summary.txt > data-curated/imgt-IG.vdj
python repsep_vdj.py data-curated/curated_TR.fa data-curated/curated_tr_Summary.txt > data-curated/imgt-TR.vdj
python repseq_vdj.py data-curated/mixcr.results > data-curated/mixcr.vdj
'''
import sys
......
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