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vidjil
vidjil
Commits
e966f4c1
Commit
e966f4c1
authored
Sep 14, 2018
by
Ryan Herbert
Browse files
sample_set.py rename genescan to barplot
the barplot had nothing to do with a genescan and is just an example.
parent
e5672757
Changes
1
Hide whitespace changes
Inline
Side-by-side
server/web2py/applications/vidjil/controllers/sample_set.py
View file @
e966f4c1
...
@@ -668,7 +668,7 @@ def getStatHeaders():
...
@@ -668,7 +668,7 @@ def getStatHeaders():
(
'bool'
,
'parser'
,
b
),
(
'bool'
,
'parser'
,
b
),
(
'bool_true'
,
'parser'
,
b
),
(
'bool_true'
,
'parser'
,
b
),
(
'loci'
,
'parser'
,
l
),
(
'loci'
,
'parser'
,
l
),
(
'
genescan
'
,
'parser'
,
bc
)
(
'
barchart
'
,
'parser'
,
bc
)
]
]
def
getResultsFileStats
(
file_name
,
dest
):
def
getResultsFileStats
(
file_name
,
dest
):
...
@@ -701,7 +701,7 @@ def getFusedStats(file_name, res, dest):
...
@@ -701,7 +701,7 @@ def getFusedStats(file_name, res, dest):
dest
[
'bool'
]
=
False
dest
[
'bool'
]
=
False
dest
[
'bool_true'
]
=
True
dest
[
'bool_true'
]
=
True
dest
[
'loci'
]
=
[
x
for
x
in
data
[
'reads'
][
'germline'
]
if
data
[
'reads'
][
'germline'
][
x
][
result_index
]
>
0
]
dest
[
'loci'
]
=
[
x
for
x
in
data
[
'reads'
][
'germline'
]
if
data
[
'reads'
][
'germline'
][
x
][
result_index
]
>
0
]
dest
[
'
genescan
'
]
=
[
68
,
27
,
18
,
45
,
89
,
63
,
53
,
64
,
93
,
21
,
47
,
5
,
64
,
68
,
46
,
68
,
18
,
dest
[
'
barchart
'
]
=
[
68
,
27
,
18
,
45
,
89
,
63
,
53
,
64
,
93
,
21
,
47
,
5
,
64
,
68
,
46
,
68
,
18
,
72
,
36
,
70
,
39
,
21
,
84
,
32
,
29
,
4
,
76
,
51
,
33
,
67
,
14
,
57
,
75
,
61
,
72
,
36
,
70
,
39
,
21
,
84
,
32
,
29
,
4
,
76
,
51
,
33
,
67
,
14
,
57
,
75
,
61
,
29
,
11
,
81
,
71
,
91
,
32
,
40
,
71
,
87
,
54
,
50
,
88
,
72
,
59
,
29
,
80
,
48
,
29
,
11
,
81
,
71
,
91
,
32
,
40
,
71
,
87
,
54
,
50
,
88
,
72
,
59
,
29
,
80
,
48
,
94
,
12
,
60
,
1
,
16
,
29
,
93
,
53
,
19
,
32
,
97
,
13
,
98
,
80
,
69
,
7
,
73
,
94
,
12
,
60
,
1
,
16
,
29
,
93
,
53
,
19
,
32
,
97
,
13
,
98
,
80
,
69
,
7
,
73
,
...
...
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