Commit e963e165 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: faster vidjil_revcomp_s22.should_get

This test was too long. We now just check the first 1000 reads and the main clone.
parent 92790a41
!LAUNCH: $LAUNCHER ../../vidjil -k 9 -G ../../germline/IGH -% 0.001 -r 4 -c clones ../../data/Stanford_S22.fasta > vidjil_s22.log && $LAUNCHER ../../vidjil -k 9 -G ../../germline/IGH -% 0.001 -r 4 -c clones ../../data/Stanford_S22.rc.fasta > vidjil_s22_rc.log && diff vidjil_s22.log vidjil_s22_rc.log
!LAUNCH: $LAUNCHER ../../vidjil -k 9 -G ../../germline/IGH -% 0.001 -r 2 -x 1000 -y 1 -c clones ../../data/Stanford_S22.fasta > vidjil_s22.log && $LAUNCHER ../../vidjil -k 9 -G ../../germline/IGH -% 0.001 -r 2 -x 1000 -y 1 -c clones ../../data/Stanford_S22.rc.fasta > vidjil_s22_rc.log && diff vidjil_s22.log vidjil_s22_rc.log
$ Same number segmented
0:==> segmented
$ Same number of windows found
f0:==> found
0:==> found
$ Same number unsegmented
0:UNSEG.*->
......@@ -12,6 +12,6 @@ $ Same number unsegmented
$ Keep the same number of windows
0:==> keep
$ Same segmentation for one of the main clones
2:clone.00..*0 74 76 100 113 169
$ Same segmentation for the main clone
2:clone.001.*0 114 118 131 137 180
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment