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vidjil
vidjil
Commits
e8e5485b
Commit
e8e5485b
authored
Feb 20, 2015
by
Mikaël Salson
Browse files
fuse.py moved from server/ to tools/
parent
e9b73245
Changes
4
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Makefile
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e8e5485b
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@@ -32,7 +32,7 @@ unit: all
pytests
:
@
echo
"*** Launching python tests..."
python
server
/fuse.py
--test
x
python
tools
/fuse.py
--test
x
@
echo
"*** All python tests passed"
should
:
all
...
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algo/tests/fuse-three-files.should_get
View file @
e8e5485b
!LAUNCH: python ../../
server
/fuse.py ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ; cat fused.vidjil
!LAUNCH: python ../../
tools
/fuse.py ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ; cat fused.vidjil
$ Fuse the three files
2: ListWindows: .1000, 1000, 1000.
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algo/tests/stanford-fuse.should_get
View file @
e8e5485b
!LAUNCH: ../../vidjil -G ../../germline/IGH ../../data/Stanford_S22.fasta ; python ../../
server
/fuse.py out/Stanford_S22.vidjil out/Stanford_S22.vidjil -o out/fused.data ; cat out/fused.data | sh format-json.sh
!LAUNCH: ../../vidjil -G ../../germline/IGH ../../data/Stanford_S22.fasta ; python ../../
tools
/fuse.py out/Stanford_S22.vidjil out/Stanford_S22.vidjil -o out/fused.data ; cat out/fused.data | sh format-json.sh
$ Points list
f1:"point": [ "", "" ]
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doc/browser.org
View file @
e8e5485b
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@@ -30,7 +30,7 @@ database computes these .vidjil files.
Otherwise, such .vidjil files can be obtained:
- from the command-line version of Vidjil (starting from
=.fasta= or =.fastq= files, see [[http://git.vidjil.org/blob/master/doc/algo.org][algo.org]]).
To gather several .vidjil files, you have to use the [[http://git.vidjil.org/blob/master/
server
/fuse.py][fuse.py]] script
To gather several .vidjil files, you have to use the [[http://git.vidjil.org/blob/master/
tools
/fuse.py][fuse.py]] script
- or by post-processing of other V(D)J analysis pipelines (contact us
if you are interested)
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