Commit e80be55c authored by marc's avatar marc Committed by Mathieu Giraud
Browse files

vidjil.cpp : output representative quality in json

parent 86d9d3dd
......@@ -1356,6 +1356,11 @@ int main (int argc, char **argv)
json_clone["_coverage_info"] = {repComp.getCoverageInfo()};
//From KmerMultiSegmenter
json_clone["seg"] = kseg->toJson();
json_clone["seg"]["quality"] = {
{"start", 0},
{"stop", kseg->getSequence().sequence.length()},
{"seq", repComp.getQuality()}
//$$ If max_clones is reached, we stop here but still outputs the representative
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