Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
vidjil
Project overview
Project overview
Details
Activity
Releases
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Issues
1,711
Issues
1,711
List
Boards
Labels
Service Desk
Milestones
Merge Requests
86
Merge Requests
86
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Operations
Operations
Incidents
Environments
Packages & Registries
Packages & Registries
Container Registry
Analytics
Analytics
CI / CD
Repository
Value Stream
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
vidjil
vidjil
Commits
e687b492
Commit
e687b492
authored
Feb 12, 2021
by
Mathieu Giraud
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
tests: new tests
close
#4692
parent
0ed84321
Pipeline
#216606
canceled with stages
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
10 additions
and
2 deletions
+10
-2
algo/tests/should-get-tests/gzip-out.should
algo/tests/should-get-tests/gzip-out.should
+10
-2
No files found.
algo/tests/should-get-tests/gzip-out.should
View file @
e687b492
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -b out-a --out-vdjfa $VIDJIL_DATA/clones_simul.fa
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -b out-a --out-vdjfa
--out-detected --out-undetected
$VIDJIL_DATA/clones_simul.fa
$ Output
1: out-a.vidjil
1: out-a.tsv
1: out-a.vdj.fa
1: out-a.detected.vdj.fa
1: out-a.UNSEG_only_V_5_.fa
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH --gz -b out-b --out-vdjfa $VIDJIL_DATA/clones_simul.fa
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH --gz -b out-b --out-vdjfa
--out-detected --out-undetected
$VIDJIL_DATA/clones_simul.fa
$ Compressed output
1: out-b.vidjil.gz
1: out-b.tsv.gz
1: out-b.vdj.fa.gz
1: out-b.detected.vdj.fa.gz
1: out-b.UNSEG_only_V_5_.fa.gz
!NO_LAUNCHER:
!NO_EXTRA:
gunzip -f out/out-b.vidjil.gz && diff -s -I '"....-..-..' -I "gz" -I "out-" out/out-a.vidjil out/out-b.vidjil ; echo "Diff .vidjil.gz: $?"
gunzip -f out/out-b.tsv.gz && diff -s out/out-a.tsv out/out-b.tsv ; echo "Diff .tsv.gz: $?"
gunzip -f out/out-b.vdj.fa.gz && diff -s out/out-a.vdj.fa out/out-b.vdj.fa ; echo "Diff .vdj.fa.gz: $?"
gunzip -f out/out-b.detected.vdj.fa.gz && diff -s out/out-a.detected.vdj.fa out/out-b.detected.vdj.fa; echo "Diff detected: $?"
gunzip -f out/out-b.UNSEG_only_V_5_.fa.gz && diff -s out/out-a.UNSEG_only_V_5_.fa out/out-b.UNSEG_only_V_5_.fa; echo "Diff UNSEG_only_V_5: $?"
$ Same output
1:Diff .vidjil.gz: 0
1:Diff .tsv.gz: 0
1:Diff .vdj.fa.gz: 0
1:Diff detected: 0
1:Diff UNSEG_only_V_5: 0
\ No newline at end of file
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment