Commit e687b492 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: new tests

close #4692
parent 0ed84321
Pipeline #216606 canceled with stages
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -b out-a --out-vdjfa $VIDJIL_DATA/clones_simul.fa
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -b out-a --out-vdjfa --out-detected --out-undetected $VIDJIL_DATA/clones_simul.fa
$ Output
1: out-a.vidjil
1: out-a.tsv
1: out-a.vdj.fa
1: out-a.detected.vdj.fa
1: out-a.UNSEG_only_V_5_.fa
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH --gz -b out-b --out-vdjfa $VIDJIL_DATA/clones_simul.fa
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH --gz -b out-b --out-vdjfa --out-detected --out-undetected $VIDJIL_DATA/clones_simul.fa
$ Compressed output
1: out-b.vidjil.gz
1: out-b.tsv.gz
1: out-b.vdj.fa.gz
1: out-b.detected.vdj.fa.gz
1: out-b.UNSEG_only_V_5_.fa.gz
!NO_LAUNCHER:
!NO_EXTRA:
gunzip -f out/out-b.vidjil.gz && diff -s -I '"....-..-..' -I "gz" -I "out-" out/out-a.vidjil out/out-b.vidjil ; echo "Diff .vidjil.gz: $?"
gunzip -f out/out-b.tsv.gz && diff -s out/out-a.tsv out/out-b.tsv ; echo "Diff .tsv.gz: $?"
gunzip -f out/out-b.vdj.fa.gz && diff -s out/out-a.vdj.fa out/out-b.vdj.fa ; echo "Diff .vdj.fa.gz: $?"
gunzip -f out/out-b.detected.vdj.fa.gz && diff -s out/out-a.detected.vdj.fa out/out-b.detected.vdj.fa; echo "Diff detected: $?"
gunzip -f out/out-b.UNSEG_only_V_5_.fa.gz && diff -s out/out-a.UNSEG_only_V_5_.fa out/out-b.UNSEG_only_V_5_.fa; echo "Diff UNSEG_only_V_5: $?"
$ Same output
1:Diff .vidjil.gz: 0
1:Diff .tsv.gz: 0
1:Diff .vdj.fa.gz: 0
1:Diff detected: 0
1:Diff UNSEG_only_V_5: 0
\ No newline at end of file
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