Commit e4b33dea authored by Mikaël Salson's avatar Mikaël Salson

algo.org: Slightly document BAM files

Fix #2553
parent c6fbe30a
...@@ -217,6 +217,10 @@ or =.fastq= file, possibly compressed with gzip (=.gz=). ...@@ -217,6 +217,10 @@ or =.fastq= file, possibly compressed with gzip (=.gz=).
This set of reads can reach several gigabytes and 2*10^9 reads. It is This set of reads can reach several gigabytes and 2*10^9 reads. It is
never loaded entirely in the memory, but reads are processed one by never loaded entirely in the memory, but reads are processed one by
one by the Vidjil algorithm. one by the Vidjil algorithm.
Vidjil can also process BAM files, but please note that:
1. The reads don't need to be aligned beforehand.
2. In case of paired-end sequencing, the reads must have already been merged
in the BAM file.
The =-h= and =-H= help options provide the list of parameters that can be The =-h= and =-H= help options provide the list of parameters that can be
used. We detail here the options of the main =-c clones= command. used. We detail here the options of the main =-c clones= command.
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