Commit e3c149e8 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: add and update

see #4386
parent 2d66798d
......@@ -37,4 +37,4 @@ $ Display advanced options
: custom Cost
$ Correct number of options, including advanced options
58:^..-
59:^..-
......@@ -14,6 +14,9 @@ $ There are no clones in the .vidjil
$ Correct output message
1:only metadata
$ There is no clone output in individual files
0:detail, by clone
!LAUNCH: rm out/Stanford_S22.tsv ; $LAUNCHER $VIDJIL_DIR/$EXEC $EXTRA -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv
$ The AIRR .tsv file has four lines
......
!LAUNCH: $VIDJIL_DIR/$EXEC -x 100 -r 1 -y 1 -z 0 -w 10 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta 2>&1
!LAUNCH: $VIDJIL_DIR/$EXEC -x 100 -r 1 -y 1 -z 0 -w 10 --out-clone-files -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta 2>&1
!OUTPUT_FILE: out/seq/clone.fa-1
### !EXIT_CODE: 1
......
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