Commit e26acaaa authored by Mathieu Giraud's avatar Mathieu Giraud

core/segment.cpp: CDR3/JUNCTION, json output

Many people are used to have the full JUNCTION, including Cys104 and Phe118/Trp118.
We thus output both 'cdr3' and 'junction' fields in the json output.
parent bd47e359
......@@ -1102,6 +1102,11 @@ json FineSegmenter::toJson(){
{"aa", CDR3aa},
{"productive", CDR3productive}
};
seg["junction"] = {
{"start", JUNCTIONstart},
{"stop", JUNCTIONend},
{"aa", JUNCTIONaa}
};
}
}
......
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