Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
vidjil
vidjil
Commits
e1b4ccdf
Commit
e1b4ccdf
authored
Sep 24, 2014
by
Mathieu Giraud
Browse files
vidjil.cpp: clarify help on -z and -A
parent
945e896e
Changes
1
Hide whitespace changes
Inline
Side-by-side
algo/vidjil.cpp
View file @
e1b4ccdf
...
...
@@ -183,8 +183,11 @@ void usage(char *progname)
<<
"Limits to report a clone"
<<
endl
<<
" -R <nb> minimal number of reads supporting a clone (default: "
<<
MIN_READS_CLONE
<<
")"
<<
endl
<<
" -% <ratio> minimal percentage of reads supporting a clone (default: "
<<
RATIO_READS_CLONE
<<
")"
<<
endl
<<
" -z <nb> maximal number of clones reported (0: no limit) (default: "
<<
MAX_CLONES
<<
")"
<<
endl
<<
" -A reports all clones (-r 0 -R 1 -% 0 -z 0), to be used only on very small datasets"
<<
endl
<<
endl
<<
"Limits to segment a clone"
<<
endl
<<
" -z <nb> maximal number of clones to be segmented (0: no limit, do not use) (default: "
<<
MAX_CLONES
<<
")"
<<
endl
<<
" -A reports and segments all clones (-r 0 -R 1 -% 0 -z 0), to be used only on very small datasets"
<<
endl
<<
endl
<<
"Fine segmentation options (second pass, see warning in doc/README)"
<<
endl
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment