doc/user.org: clone coverage, formal definition

e0d8420c · Mathieu Giraud · 02b4bc6d · e0d8420c
Commit e0d8420c authored Jan 19, 2017 by Mathieu Giraud
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@@ -381,7 +381,9 @@ There can be several causes leading to bad ratios:


 ** Clone coverage
-   The clone coverage is computed over the consensus sequence which is
+   The clone coverage is the ratio of the length of the clone consensus sequence
+   to the median read length in the clone.
+   A consensus sequence is
   displayed for each clone (see [[representative][What is the sequence displayed for each clone?]]). 
   Its length should be representative of the read lengths among that clone. A
   clone can be constituted of thousands of reads of various lengths. We