Commit e0d8420c authored by Mathieu Giraud's avatar Mathieu Giraud

doc/user.org: clone coverage, formal definition

parent 02b4bc6d
......@@ -381,7 +381,9 @@ There can be several causes leading to bad ratios:
** Clone coverage
The clone coverage is computed over the consensus sequence which is
The clone coverage is the ratio of the length of the clone consensus sequence
to the median read length in the clone.
A consensus sequence is
displayed for each clone (see [[representative][What is the sequence displayed for each clone?]]).
Its length should be representative of the read lengths among that clone. A
clone can be constituted of thousands of reads of various lengths. We
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