Commit deda88a2 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/ converted from doc/ + details

parent 2f952c41
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......@@ -491,7 +491,7 @@ two windows that must be clustered.
The main output of Vidjil-algo (with the default `-c clones` command) are two following files:
- The `.vidjil` file is *the file for the Vidjil web application*.
The file is in a `.json` format (detailed in [](
The file is in a `.json` format (detailed in [vidjil-format](vidjil-format))
describing the windows and their count, the consensus sequences (`-y`),
the detailed V(D)J and CDR3 designation (`-z`, see warning below), and possibly
the results of the further clustering.
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......@@ -10,6 +10,7 @@ repo_name: gitlab
- vidjil-algo:
- locus and recombinations:
- .vidjil file format:
- mkdocs-extra.css
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